HL_7NRD_071

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7NRD|1|LA|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1376

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7NRD|1|LA|G|3303
7NRD|1|LA|U|3304
7NRD|1|LA|A|3305
7NRD|1|LA|U|3306
7NRD|1|LA|A|3307
7NRD|1|LA|C|3308
7NRD|1|LA|G|3309
7NRD|1|LA|A|3310
7NRD|1|LA|C|3311

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A