HL_7NRD_072

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

7NRD|1|LA|U|3351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_072 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1296

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7NRD|1|LA|C|3350
7NRD|1|LA|U|3351
7NRD|1|LA|U|3352
7NRD|1|LA|G|3353

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain SV

40S ribosomal protein S8-A