HL_7NRD_079
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_079 not in the Motif Atlas
- Homologous match to HL_8C3A_192
- Geometric discrepancy: 0.163
- The information below is about HL_8C3A_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|G|7
7NRD|1|S2|U|8
7NRD|1|S2|U|9
7NRD|1|S2|G|10
7NRD|1|S2|A|11
7NRD|1|S2|U|12
7NRD|1|S2|C|13
7NRD|1|S2|C|14
7NRD|1|S2|U|15
7NRD|1|S2|G|16
7NRD|1|S2|C|17
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain S3
- mRNA (32-MER)
- Chain SR
- 40S ribosomal protein S2
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: