HL_7NRD_089

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7NRD|1|S2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_089 not in the Motif Atlas

Geometric match to HL_4U7U_001

Geometric discrepancy: 0.3351

The information below is about HL_4U7U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7NRD|1|S2|C|414
7NRD|1|S2|C|415
7NRD|1|S2|A|416
7NRD|1|S2|A|417
7NRD|1|S2|G|418
7NRD|1|S2|G|419

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain LX

60S ribosomal protein L23-A

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A