HL_7NRD_094

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

7NRD|1|S2|U|718, 7NRD|1|S2|U|719, 7NRD|1|S2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_094 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2078

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7NRD|1|S2|C|716
7NRD|1|S2|C|717
7NRD|1|S2|U|718
7NRD|1|S2|U|719
7NRD|1|S2|G|720
7NRD|1|S2|U|721
7NRD|1|S2|G|722

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains