HL_7NRD_115

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7NRD|1|Sm|C|16, 7NRD|1|Sm|C|17, 7NRD|1|Sm|U|18|||A, 7NRD|1|Sm|G|19, 7NRD|1|Sm|G|20, 7NRD|1|Sm|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_115 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1498

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|Sm|C|13
7NRD|1|Sm|A|14
7NRD|1|Sm|G|15
7NRD|1|Sm|C|16
7NRD|1|Sm|C|17
7NRD|1|Sm|U|18|||A
7NRD|1|Sm|G|19
7NRD|1|Sm|G|20
7NRD|1|Sm|U|21
7NRD|1|Sm|A|22
7NRD|1|Sm|G|23

Current chains

Chain Sm

tRNA (77-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA