HL_7NRD_116
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_116 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1814
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7NRD|1|Sm|G|32
7NRD|1|Sm|C|33
7NRD|1|Sm|U|34
7NRD|1|Sm|C|35
7NRD|1|Sm|A|36
7NRD|1|Sm|U|37
7NRD|1|Sm|A|38
7NRD|1|Sm|A|39
7NRD|1|Sm|C|40
Current chains
- Chain Sm
- tRNA (77-MER)
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S3
- mRNA (32-MER)
- Chain SF
- 40S ribosomal protein S16-A
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