HL_7NRD_120

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_120 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.1877

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7NRD|1|Sn|G|53
7NRD|1|Sn|A|54
7NRD|1|Sn|U|55
7NRD|1|Sn|C|56
7NRD|1|Sn|G|57
7NRD|1|Sn|A|58
7NRD|1|Sn|A|59
7NRD|1|Sn|A|60
7NRD|1|Sn|C|61

Current chains

Chain Sn

tRNA (75-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LL

60S ribosomal protein L10