HL_7NRD_123

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7NRD|1|LA|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_123 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.275

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7NRD|1|LA|U|1862
7NRD|1|LA|G|1863
7NRD|1|LA|A|1864
7NRD|1|LA|A|1865
7NRD|1|LA|C|1866
7NRD|1|LA|A|1867
7NRD|1|LA|G|1868

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A