HL_7NSI_009

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

7NSI|1|AA|U|345

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_009 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.2228

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NSI|1|AA|C|342
7NSI|1|AA|U|343
7NSI|1|AA|G|344
7NSI|1|AA|U|345
7NSI|1|AA|A|346
7NSI|1|AA|A|347
7NSI|1|AA|A|348
7NSI|1|AA|A|349
7NSI|1|AA|A|350
7NSI|1|AA|G|351

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AK

Mitochondrial ribosomal protein S11

Chain AU

28S ribosomal protein S21, mitochondrial