HL_7NSI_015
3D structure
- PDB id
- 7NSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCCAAUUC
- Length
- 8 nucleotides
- Bulged bases
- 7NSI|1|AA|C|599, 7NSI|1|AA|U|604
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NSI_015 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3522
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7NSI|1|AA|G|598
7NSI|1|AA|C|599
7NSI|1|AA|C|600
7NSI|1|AA|A|601
7NSI|1|AA|A|602
7NSI|1|AA|U|603
7NSI|1|AA|U|604
7NSI|1|AA|C|605
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AE
- 28S ribosomal protein S5, mitochondrial isoform X2
- Chain AN
- 28S ribosomal protein S14, mitochondrial
- Chain Ai
- Mitochondrial ribosomal protein S33
- Chain Ao
- Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,mS39,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3
Coloring options: