HL_7NSI_019

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

7NSI|1|AA|C|766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_019 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.2145

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7NSI|1|AA|A|760
7NSI|1|AA|U|761
7NSI|1|AA|G|762
7NSI|1|AA|A|763
7NSI|1|AA|A|764
7NSI|1|AA|A|765
7NSI|1|AA|C|766
7NSI|1|AA|U|767

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AN

28S ribosomal protein S14, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S33