HL_7NSI_021

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

7NSI|1|AA|C|883, 7NSI|1|AA|C|884, 7NSI|1|AA|U|885

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_021 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3645

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

7NSI|1|AA|U|880
7NSI|1|AA|A|881
7NSI|1|AA|A|882
7NSI|1|AA|C|883
7NSI|1|AA|C|884
7NSI|1|AA|U|885
7NSI|1|AA|A|886
7NSI|1|AA|U|887
7NSI|1|AA|A|888

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

Mitochondrial ribosomal protein S34