HL_7NSI_063

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUAAUCAAA

Length

9 nucleotides

Bulged bases

7NSI|1|BB|U|20, 7NSI|1|BB|C|21, 7NSI|1|BB|A|22, 7NSI|1|BB|A|23

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_063 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1823

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7NSI|1|BB|U|12
7NSI|1|BB|U|13
7NSI|1|BB|A|14
7NSI|1|BB|A|15
7NSI|1|BB|U|20
7NSI|1|BB|C|21
7NSI|1|BB|A|22
7NSI|1|BB|A|23
7NSI|1|BB|A|24

Current chains

Chain BB

CP tRNAPhe

Nearby chains

Chain BS

39S ribosomal protein L18, mitochondrial isoform 1

Chain Bb

39S ribosomal protein L38, mitochondrial

Chain Bo

39S ribosomal protein L52, mitochondrial