HL_7NSO_015

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7NSO|1|A|G|329, 7NSO|1|A|A|330, 7NSO|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSO_015 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1113

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7NSO|1|A|G|327
7NSO|1|A|U|328
7NSO|1|A|G|329
7NSO|1|A|A|330
7NSO|1|A|C|331
7NSO|1|A|A|332
7NSO|1|A|G|333
7NSO|1|A|C|334
7NSO|1|A|C|335

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24