HL_7NSO_017

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7NSO|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSO_017 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0966

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NSO|1|A|G|410
7NSO|1|A|G|411
7NSO|1|A|A|412
7NSO|1|A|C|413
7NSO|1|A|C|414
7NSO|1|A|A|415
7NSO|1|A|U|416
7NSO|1|A|C|417

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain L

50S ribosomal protein L15