HL_7NSP_001

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

7NSP|1|8|U|16, 7NSP|1|8|U|17, 7NSP|1|8|G|18, 7NSP|1|8|G|19, 7NSP|1|8|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSP_001 not in the Motif Atlas

Homologous match to HL_2BTE_001

Geometric discrepancy: 0.2213

The information below is about HL_2BTE_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_68767.1

Basepair signature

cWW-cWS-tSH-cWS-F

Number of instances in this motif group

3

Unit IDs

7NSP|1|8|G|12
7NSP|1|8|G|13
7NSP|1|8|A|14
7NSP|1|8|A|15
7NSP|1|8|U|16
7NSP|1|8|U|17
7NSP|1|8|G|18
7NSP|1|8|G|19
7NSP|1|8|U|20
7NSP|1|8|A|21
7NSP|1|8|G|22
7NSP|1|8|A|23
7NSP|1|8|C|24

Current chains

Chain 8

P-tRNA (leu)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5