Motif HL_68767.1 Version HL_68767.1 of this group appears in releases 3.89 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-6	2-7	3-5
1	HL_2BTE_001	2BTE	0.1053	5	tRNA D-loop	B	tRNA	G	12	G	13	A	14	A	15	A	20\|\|\|A	G	21	A	22	C	23	cWW	cWS	tSH	cWS
2	HL_3ZGZ_001	3ZGZ	0.0000	5	tRNA D-loop	B	tRNA	G	12	G	13	A	14	A	15	A	20\|\|\|A	G	21	A	22	C	23	cWW	cWS	tSH	cWS
3	HL_5AH5_005	5AH5	0.1111	5	tRNA D-loop	D	tRNA	G	12	A	13	A	14	A	15	A	20\|\|\|A	A	21	A	22	C	23	cWW	cWS	tSH	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAUGGGUAGAC	1
GGAAUCGGUAGAC	1
GAAAUCGGUAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAUGGGUAGA	1
GAAUCGGUAGA	1
AAAUCGGUAAA	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (3)
Basepair signature: cWW-cWS-tSH-cWS-F
Heat map statistics: Min 0.11 | Avg 0.08 | Max 0.13

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