HL_7NSP_111

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSP_111 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2268

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NSP|1|A|G|2304
7NSP|1|A|U|2305
7NSP|1|A|C|2306
7NSP|1|A|G|2307
7NSP|1|A|G|2308
7NSP|1|A|A|2309
7NSP|1|A|C|2310
7NSP|1|A|A|2311
7NSP|1|A|U|2312

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain F

50S ribosomal protein L5