HL_7NWG_004

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_004 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.2014

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7NWG|1|51|C|89
7NWG|1|51|G|90
7NWG|1|51|G|91
7NWG|1|51|C|92
7NWG|1|51|G|93
7NWG|1|51|A|94
7NWG|1|51|G|95

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain L3

L13

Chain Q3

L18

Chain a3

uL15

Chain o3

eL42