7NWG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7NWG_119 | 1/33/52:60 | T-loop with 2 stacked bulged bases | homologous HL_3TUP_003 HL_33597.1 | |
| HL_7NWG_002 | 1/51/30:52 | No text annotation | ||
| HL_7NWG_147 | 1/51/68:73 | No text annotation | homologous HL_8P9A_114 HL_51020.1 | |
| HL_7NWG_004 | 1/51/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7NWG_005 | 1/51/131:137 | No text annotation | geometric HL_7A0S_011 HL_75660.6 | |
| HL_7NWG_148 | 1/51/203:212 | No text annotation | ||
| HL_7NWG_006 | 1/51/205:211 | No text annotation | ||
| HL_7NWG_007 | 1/51/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7NWG_008 | 1/51/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7NWG_009 | 1/51/288:299 | No text annotation | ||
| HL_7NWG_010 | 1/51/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7NWG_011 | 1/51/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7NWG_012 | 1/51/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7NWG_149 | 1/51/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_7NWG_019 | 1/51/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7NWG_022 | 1/51/1479:1486 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7NWG_150 | 1/51/1550:1578 | No text annotation | ||
| HL_7NWG_023 | 1/51/1551:1576 | No text annotation | ||
| HL_7NWG_024 | 1/51/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_7NWG_025 | 1/51/1624:1640 | No text annotation | ||
| HL_7NWG_026 | 1/51/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7NWG_028 | 1/51/1814:1824 | No text annotation | ||
| HL_7NWG_151 | 1/51/1864:1870 | GNRA | homologous HL_8CRE_024 NA | |
| HL_7NWG_030 | 1/51/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7NWG_034 | 1/51/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_7NWG_035 | 1/51/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7NWG_152 | 1/51/2415:2429 | No text annotation | ||
| HL_7NWG_037 | 1/51/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7NWG_038 | 1/51/2487:2491 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7NWG_039 | 1/51/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7NWG_041 | 1/51/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7NWG_042 | 1/51/2624:2632 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_7NWG_043 | 1/51/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7NWG_044 | 1/51/2704:2712 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_7NWG_045 | 1/51/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7NWG_046 | 1/51/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7NWG_153 | 1/51/2867:2883 | No text annotation | ||
| HL_7NWG_047 | 1/51/2872:2877 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7NWG_049 | 1/51/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7NWG_050 | 1/51/3640:3649 | No text annotation | ||
| HL_7NWG_132 | 1/51/3658:3686 | No text annotation | ||
| HL_7NWG_051 | 1/51/3665:3677 | No text annotation | geometric HL_7VTI_001 NA | |
| HL_7NWG_052 | 1/51/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_7NWG_054 | 1/51/3794:3806 | No text annotation | geometric HL_7KI3_001 HL_75660.6 | |
| HL_7NWG_055 | 1/51/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7NWG_058 | 1/51/4193:4201 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_7NWG_059 | 1/51/4207:4225 | No text annotation | ||
| HL_7NWG_060 | 1/51/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_7NWG_061 | 1/51/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_7NWG_062 | 1/51/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7NWG_063 | 1/51/4319:4328 | No text annotation | ||
| HL_7NWG_064 | 1/51/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_7NWG_134 | 1/51/4400:4444 | No text annotation | ||
| HL_7NWG_065 | 1/51/4416:4426 | No text annotation | ||
| HL_7NWG_066 | 1/51/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7NWG_154 | 1/51/4495:4505 | No text annotation | ||
| HL_7NWG_067 | 1/51/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_7NWG_068 | 1/51/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_7NWG_069 | 1/51/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_7NWG_137 | 1/51/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7NWG_155 | 1/51/4680:4710 | No text annotation | ||
| HL_7NWG_071 | 1/51/4686:4704 | No text annotation | ||
| HL_7NWG_073 | 1/51/4906:4915 | No text annotation | ||
| HL_7NWG_074 | 1/51/4975:4983 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_7NWG_076 | 1/71/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7NWG_139 | 1/71/79:97 | No text annotation | ||
| HL_7NWG_077 | 1/71/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7NWG_078 | 1/81/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_7NWG_079 | 1/81/68:90 | No text annotation | ||
| HL_7NWG_080 | 1/81/106:113 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_7NWG_082 | 1/A2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7NWG_083 | 1/A2/62:86 | No text annotation | ||
| HL_7NWG_084 | 1/A2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7NWG_088 | 1/A2/377:387 | tRNA D-loop | geometric HL_5WWT_001 HL_45175.1 | |
| HL_7NWG_089 | 1/A2/414:423 | No text annotation | ||
| HL_7NWG_156 | 1/A2/437:456 | No text annotation | ||
| HL_7NWG_090 | 1/A2/439:454 | No text annotation | ||
| HL_7NWG_091 | 1/A2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_7NWG_157 | 1/A2/498:504 | No text annotation | homologous HL_8CRE_202 HL_89167.1 | |
| HL_7NWG_094 | 1/A2/565:585 | No text annotation | ||
| HL_7NWG_095 | 1/A2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7NWG_096 | 1/A2/819:829 | No text annotation | ||
| HL_7NWG_099 | 1/A2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7NWG_100 | 1/A2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_7NWG_101 | 1/A2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7NWG_103 | 1/A2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_7NWG_104 | 1/A2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_7NWG_105 | 1/A2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7NWG_106 | 1/A2/1290:1309 | No text annotation | ||
| HL_7NWG_107 | 1/A2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_7NWG_108 | 1/A2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7NWG_110 | 1/A2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_7NWG_111 | 1/A2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_7NWG_112 | 1/A2/1613:1626 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_7NWG_113 | 1/A2/1656:1668 | No text annotation | ||
| HL_7NWG_115 | 1/A2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7NWG_116 | 1/q3/11:24 | No text annotation | homologous HL_4V9I_038 NA | |
| HL_7NWG_117 | 1/q3/31:39 | No text annotation | homologous HL_4YCP_002 NA | |
| HL_7NWG_118 | 1/q3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V90_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NWG_001 | No text annotation | ||
| HL_7NWG_120 | No text annotation | ||
| HL_7NWG_003 | No text annotation | ||
| HL_7NWG_121 | No text annotation | ||
| HL_7NWG_122 | No text annotation | ||
| HL_7NWG_123 | tRNA anticodon loop | ||
| HL_7NWG_013 | Externally structured | ||
| HL_7NWG_014 | No text annotation | ||
| HL_7NWG_015 | No text annotation | ||
| HL_7NWG_016 | No text annotation | ||
| HL_7NWG_124 | No text annotation | ||
| HL_7NWG_017 | No text annotation | ||
| HL_7NWG_018 | No text annotation | ||
| HL_7NWG_020 | No text annotation | ||
| HL_7NWG_021 | No text annotation | ||
| HL_7NWG_125 | No text annotation | ||
| HL_7NWG_126 | No text annotation | ||
| HL_7NWG_027 | GNRA | ||
| HL_7NWG_029 | No text annotation | ||
| HL_7NWG_127 | No text annotation | ||
| HL_7NWG_031 | No text annotation | ||
| HL_7NWG_032 | GNRA wlth tandem sheared | ||
| HL_7NWG_033 | No text annotation | ||
| HL_7NWG_128 | No text annotation | ||
| HL_7NWG_036 | No text annotation | ||
| HL_7NWG_129 | No text annotation | ||
| HL_7NWG_040 | No text annotation | ||
| HL_7NWG_130 | tRNA D-loop | ||
| HL_7NWG_131 | No text annotation | ||
| HL_7NWG_048 | No text annotation | ||
| HL_7NWG_053 | No text annotation | ||
| HL_7NWG_056 | No text annotation | ||
| HL_7NWG_057 | No text annotation | ||
| HL_7NWG_133 | No text annotation | ||
| HL_7NWG_135 | No text annotation | ||
| HL_7NWG_136 | No text annotation | ||
| HL_7NWG_070 | tRNA anticodon loop | ||
| HL_7NWG_138 | No text annotation | ||
| HL_7NWG_072 | No text annotation | ||
| HL_7NWG_075 | Externally structured | ||
| HL_7NWG_081 | No text annotation | ||
| HL_7NWG_140 | No text annotation | ||
| HL_7NWG_085 | T-loop with 2 bulged bases not stacked | ||
| HL_7NWG_086 | No text annotation | ||
| HL_7NWG_087 | No text annotation | ||
| HL_7NWG_141 | No text annotation | ||
| HL_7NWG_142 | No text annotation | ||
| HL_7NWG_143 | No text annotation | ||
| HL_7NWG_092 | No text annotation | ||
| HL_7NWG_093 | GNRA with extra cWW | ||
| HL_7NWG_144 | tRNA D-loop | ||
| HL_7NWG_097 | No text annotation | ||
| HL_7NWG_098 | No text annotation | ||
| HL_7NWG_145 | No text annotation | ||
| HL_7NWG_102 | Externally structured | ||
| HL_7NWG_109 | No text annotation | ||
| HL_7NWG_114 | No text annotation | ||
| HL_7NWG_146 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7NWG_001 | 1/33/1:2, 1/33/70:72 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_7NWG_234 | 1/33/3:51, 1/33/61:69 | No text annotation | ||
| IL_7NWG_003 | 1/33/5:51, 1/33/61:67 | No text annotation | ||
| IL_7NWG_004 | 1/51/10:14, 1/81/143:146 | No text annotation | geometric IL_1CSL_001 NA | |
| IL_7NWG_005 | 1/51/16:18, 1/81/139:141 | Isolated cWH basepair | geometric IL_4J50_001 IL_10892.1 | |
| IL_7NWG_006 | 1/51/26:27, 1/51/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7NWG_306 | 1/51/79:88, 1/51/96:104 | No text annotation | ||
| IL_7NWG_007 | 1/51/81:89, 1/51/95:102 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7NWG_008 | 1/51/118:123, 1/51/146:153 | No text annotation | ||
| IL_7NWG_009 | 1/51/123:126, 1/51/142:146 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_7NWG_010 | 1/51/127:129, 1/51/140:141 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7NWG_011 | 1/51/129:130, 1/51/138:140 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7NWG_012 | 1/51/168:174, 1/51/262:267 | No text annotation | ||
| IL_7NWG_016 | 1/51/195:196, 1/51/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7NWG_017 | 1/51/199:201, 1/51/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7NWG_018 | 1/51/202:205, 1/51/211:213 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_7NWG_019 | 1/51/339:342, 1/81/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
| IL_7NWG_236 | 1/51/345:379, 1/81/21:29 | No text annotation | ||
| IL_7NWG_020 | 1/51/387:390, 1/51/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7NWG_021 | 1/51/415:421, 1/81/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7NWG_307 | 1/51/441:446, 1/51/1300:1306 | No text annotation | ||
| IL_7NWG_022 | 1/51/443:446, 1/51/1300:1304 | No text annotation | ||
| IL_7NWG_308 | 1/51/448:450, 1/51/1297:1298 | No text annotation | ||
| IL_7NWG_239 | 1/51/462:472, 1/51/682:693 | No text annotation | ||
| IL_7NWG_025 | 1/51/481:485, 1/51/671:673 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_7NWG_026 | 1/51/487:488, 1/51/665:669 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_7NWG_242 | 1/51/508:510, 1/51/649:650 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_7NWG_032 | 1/51/709:710, 1/51/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_7NWG_309 | 1/51/723:725, 1/51/941:945 | No text annotation | ||
| IL_7NWG_034 | 1/51/727:731, 1/51/938:939 | No text annotation | ||
| IL_7NWG_244 | 1/51/727:739, 1/51/923:939 | No text annotation | ||
| IL_7NWG_035 | 1/51/731:739, 1/51/923:938 | No text annotation | ||
| IL_7NWG_036 | 1/51/745:754, 1/51/909:919 | No text annotation | ||
| IL_7NWG_245 | 1/51/745:758, 1/51/906:919 | No text annotation | ||
| IL_7NWG_037 | 1/51/754:758, 1/51/906:909 | No text annotation | ||
| IL_7NWG_039 | 1/51/978:982, 1/51/1273:1278 | No text annotation | ||
| IL_7NWG_310 | 1/51/1082:1084, 1/51/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.4 | |
| IL_7NWG_042 | 1/51/1086:1087, 1/51/1209:1211 | No text annotation | ||
| IL_7NWG_044 | 1/51/1173:1178, 1/51/1183:1188 | No text annotation | ||
| IL_7NWG_045 | 1/51/1341:1343, 1/51/1514:1515 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7NWG_046 | 1/51/1343:1344, 1/51/1512:1514 | Single stack bend | geometric IL_5J7L_044 NA | |
| IL_7NWG_247 | 1/51/1343:1345, 1/51/1511:1514 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_7NWG_047 | 1/51/1357:1360, 1/51/1379:1382 | No text annotation | ||
| IL_7NWG_311 | 1/51/1357:1361, 1/51/1376:1382 | No text annotation | ||
| IL_7NWG_048 | 1/51/1360:1361, 1/51/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 NA | |
| IL_7NWG_051 | 1/51/1425:1429, 1/51/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7NWG_052 | 1/51/1467:1468, 1/51/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_7NWG_053 | 1/51/1469:1472, 1/51/1493:1495 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_7NWG_054 | 1/51/1472:1474, 1/51/1490:1493 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_7NWG_055 | 1/51/1474:1476, 1/51/1489:1490 | No text annotation | ||
| IL_7NWG_056 | 1/51/1520:1522, 1/51/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7NWG_057 | 1/51/1522:1526, 1/51/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_7NWG_312 | 1/51/1522:1537, 1/51/1622:1655 | No text annotation | ||
| IL_7NWG_058 | 1/51/1550:1551, 1/51/1576:1578 | Single bulged G | geometric IL_4LVW_002 IL_28408.1 | |
| IL_7NWG_059 | 1/51/1585:1590, 1/51/1604:1608 | No text annotation | ||
| IL_7NWG_060 | 1/51/1590:1592, 1/51/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_7NWG_313 | 1/51/1671:1673, 1/51/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.1 | |
| IL_7NWG_062 | 1/51/1686:1688, 1/51/1848:1851 | No text annotation | ||
| IL_7NWG_064 | 1/51/1721:1725, 1/51/1838:1841 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_7NWG_065 | 1/51/1732:1737, 1/51/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7NWG_314 | 1/51/1737:1744, 1/51/1786:1792 | No text annotation | ||
| IL_7NWG_067 | 1/51/1745:1751, 1/51/1779:1785 | No text annotation | ||
| IL_7NWG_068 | 1/51/1753:1756, 1/51/1776:1777 | Major groove platform | geometric IL_4WF9_026 IL_48076.7 | |
| IL_7NWG_070 | 1/51/1857:1861, 1/51/1873:1877 | No text annotation | ||
| IL_7NWG_071 | 1/51/1905:1909, 1/51/2067:2071 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_7NWG_072 | 1/51/1909:1918, 1/51/2064:2067 | No text annotation | ||
| IL_7NWG_251 | 1/51/1909:1922, 1/51/2062:2067 | No text annotation | ||
| IL_7NWG_073 | 1/51/1918:1920, 1/51/2063:2064 | No text annotation | ||
| IL_7NWG_074 | 1/51/1920:1922, 1/51/2062:2063 | No text annotation | ||
| IL_7NWG_075 | 1/51/1925:1933, 1/51/2053:2059 | No text annotation | ||
| IL_7NWG_252 | 1/51/1926:1945, 1/51/2037:2058 | No text annotation | ||
| IL_7NWG_076 | 1/51/1933:1945, 1/51/2037:2053 | No text annotation | ||
| IL_7NWG_077 | 1/51/1946:1951, 1/51/2031:2036 | Other IL | geometric IL_4WF9_084 NA | |
| IL_7NWG_315 | 1/51/1946:1969, 1/51/2019:2036 | No text annotation | ||
| IL_7NWG_078 | 1/51/2083:2085, 1/51/2272:2273 | No text annotation | ||
| IL_7NWG_079 | 1/51/2290:2292, 1/51/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7NWG_080 | 1/51/2299:2301, 1/51/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7NWG_316 | 1/51/2301:2314, 1/51/2325:2334 | No text annotation | ||
| IL_7NWG_081 | 1/51/2302:2309, 1/51/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7NWG_082 | 1/51/2312:2314, 1/51/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7NWG_083 | 1/51/2358:2364, 1/51/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7NWG_084 | 1/51/2446:2450, 1/51/2509:2514 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_7NWG_085 | 1/51/2542:2547, 1/51/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 NA | |
| IL_7NWG_317 | 1/51/2598:2602, 1/51/2737:2747 | No text annotation | ||
| IL_7NWG_086 | 1/51/2613:2614, 1/51/2724:2726 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7NWG_087 | 1/51/2614:2615, 1/51/2722:2724 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_7NWG_257 | 1/51/2614:2616, 1/51/2721:2724 | No text annotation | geometric IL_8C3A_070 NA | |
| IL_7NWG_318 | 1/51/2646:2648, 1/51/2685:2688 | No text annotation | ||
| IL_7NWG_089 | 1/51/2651:2653, 1/51/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_7NWG_258 | 1/51/2654:2662, 1/51/2672:2680 | No text annotation | ||
| IL_7NWG_090 | 1/51/2655:2662, 1/51/2672:2679 | No text annotation | ||
| IL_7NWG_091 | 1/51/2831:2838, 1/51/3850:3854 | No text annotation | ||
| IL_7NWG_092 | 1/51/2844:2846, 1/51/3842:3844 | Isolated tWW turn | geometric IL_7A0S_060 IL_10432.1 | |
| IL_7NWG_093 | 1/51/2846:2855, 1/51/3837:3842 | No text annotation | ||
| IL_7NWG_094 | 1/51/2867:2872, 1/51/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7NWG_095 | 1/51/2889:2891, 1/51/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_7NWG_097 | 1/51/3631:3633, 1/51/3827:3830 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.1 | |
| IL_7NWG_098 | 1/51/3659:3665, 1/51/3677:3685 | No text annotation | ||
| IL_7NWG_099 | 1/51/3700:3705, 1/51/3745:3750 | No text annotation | ||
| IL_7NWG_100 | 1/51/3708:3710, 1/51/3741:3742 | Single stack bend | geometric IL_5J7L_044 NA | |
| IL_7NWG_261 | 1/51/3708:3721, 1/51/3732:3742 | No text annotation | ||
| IL_7NWG_101 | 1/51/3710:3713, 1/51/3740:3741 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.1 | |
| IL_7NWG_262 | 1/51/3710:3721, 1/51/3732:3741 | No text annotation | ||
| IL_7NWG_102 | 1/51/3715:3721, 1/51/3732:3738 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_7NWG_103 | 1/51/3895:3898, 1/51/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7NWG_319 | 1/51/3900:3902, 1/51/4558:4561 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_7NWG_105 | 1/51/3911:3915, 1/51/4388:4391 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_7NWG_106 | 1/51/3915:3920, 1/51/4381:4388 | No text annotation | ||
| IL_7NWG_107 | 1/51/3927:3929, 1/51/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7NWG_320 | 1/51/3927:3931, 1/51/4179:4184 | No text annotation | ||
| IL_7NWG_108 | 1/51/3943:3952, 1/51/4060:4070 | No text annotation | ||
| IL_7NWG_109 | 1/51/4082:4088, 1/51/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7NWG_111 | 1/51/4191:4192, 1/51/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7NWG_112 | 1/51/4243:4245, 1/51/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7NWG_113 | 1/51/4291:4293, 1/51/4317:4318 | No text annotation | ||
| IL_7NWG_321 | 1/51/4291:4294, 1/51/4316:4318 | Isolated non-canonical cWW pair | geometric IL_8P9A_444 IL_01003.1 | |
| IL_7NWG_114 | 1/51/4295:4297, 1/51/4314:4315 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_7NWG_115 | 1/51/4297:4298, 1/51/4312:4314 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_7NWG_116 | 1/51/4347:4350, 1/51/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7NWG_117 | 1/51/4400:4403, 1/51/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7NWG_118 | 1/51/4403:4408, 1/51/4434:4440 | No text annotation | ||
| IL_7NWG_119 | 1/51/4412:4416, 1/51/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7NWG_120 | 1/51/4453:4454, 1/51/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7NWG_121 | 1/51/4456:4458, 1/51/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7NWG_122 | 1/51/4458:4459, 1/51/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7NWG_123 | 1/51/4466:4470, 1/51/4485:4491 | No text annotation | ||
| IL_7NWG_124 | 1/51/4495:4497, 1/51/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_01003.1 | |
| IL_7NWG_125 | 1/51/4537:4540, 1/51/4545:4549 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_7NWG_126 | 1/51/4578:4582, 1/51/4721:4725 | No text annotation | ||
| IL_7NWG_322 | 1/51/4578:4585, 1/51/4717:4725 | No text annotation | ||
| IL_7NWG_127 | 1/51/4582:4586, 1/51/4716:4721 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_7NWG_128 | 1/51/4596:4603, 1/51/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7NWG_323 | 1/51/4624:4629, 1/51/4669:4673 | No text annotation | ||
| IL_7NWG_130 | 1/51/4632:4637, 1/51/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7NWG_272 | 1/51/4632:4643, 1/51/4654:4666 | No text annotation | ||
| IL_7NWG_131 | 1/51/4638:4641, 1/51/4658:4661 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_7NWG_132 | 1/51/4641:4643, 1/51/4654:4658 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_7NWG_133 | 1/51/4680:4686, 1/51/4704:4710 | No text annotation | ||
| IL_7NWG_136 | 1/51/4756:4766, 1/51/4868:4877 | No text annotation | ||
| IL_7NWG_273 | 1/51/4756:4767, 1/51/4867:4877 | No text annotation | ||
| IL_7NWG_137 | 1/51/4769:4775, 1/51/4860:4865 | No text annotation | ||
| IL_7NWG_138 | 1/51/4885:4888, 1/51/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_7NWG_139 | 1/51/4890:4896, 1/51/4924:4929 | No text annotation | ||
| IL_7NWG_141 | 1/51/4972:4975, 1/51/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7NWG_142 | 1/51/4992:4996, 1/51/5055:5059 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_7NWG_143 | 1/51/4996:4997, 1/51/5053:5055 | No text annotation | ||
| IL_7NWG_144 | 1/51/4999:5003, 1/51/5044:5051 | No text annotation | ||
| IL_7NWG_275 | 1/51/4999:5009, 1/51/5039:5051 | No text annotation | ||
| IL_7NWG_145 | 1/51/5003:5009, 1/51/5039:5044 | No text annotation | ||
| IL_7NWG_146 | 1/51/5012:5014, 1/51/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7NWG_276 | 1/51/5012:5017, 1/51/5032:5036 | No text annotation | ||
| IL_7NWG_147 | 1/51/5014:5017, 1/51/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7NWG_148 | 1/71/15:16, 1/71/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7NWG_277 | 1/71/15:17, 1/71/61:64 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.1 | |
| IL_7NWG_149 | 1/71/19:27, 1/71/52:59 | No text annotation | ||
| IL_7NWG_324 | 1/71/20:30, 1/71/47:58 | No text annotation | ||
| IL_7NWG_150 | 1/71/27:30, 1/71/47:52 | No text annotation | ||
| IL_7NWG_151 | 1/71/31:36, 1/71/41:46 | No text annotation | ||
| IL_7NWG_279 | 1/71/71:78, 1/71/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_7NWG_153 | 1/71/79:81, 1/71/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_7NWG_154 | 1/71/82:85, 1/71/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7NWG_280 | 1/81/43:66, 1/81/92:100 | No text annotation | ||
| IL_7NWG_155 | 1/81/64:66, 1/81/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_7NWG_156 | 1/A2/23:25, 1/A2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_7NWG_157 | 1/A2/34:36, 1/A2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7NWG_158 | 1/A2/37:40, 1/A2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_7NWG_159 | 1/A2/41:48, 1/A2/478:481 | No text annotation | ||
| IL_7NWG_325 | 1/A2/41:51, 1/A2/476:481 | No text annotation | ||
| IL_7NWG_160 | 1/A2/49:53, 1/A2/474:477 | No text annotation | geometric IL_1U6B_004 IL_20358.1 | |
| IL_7NWG_161 | 1/A2/56:62, 1/A2/86:89 | No text annotation | ||
| IL_7NWG_162 | 1/A2/108:110, 1/A2/351:353 | Isolated non-canonical cWW pair | geometric IL_4TS2_004 IL_71625.1 | |
| IL_7NWG_326 | 1/A2/108:112, 1/A2/349:353 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
| IL_7NWG_163 | 1/A2/110:112, 1/A2/349:351 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_7NWG_164 | 1/A2/112:115, 1/A2/348:349 | Major groove intercalation | geometric IL_4WF9_071 IL_78536.1 | |
| IL_7NWG_284 | 1/A2/112:121, 1/A2/343:349 | No text annotation | ||
| IL_7NWG_165 | 1/A2/115:121, 1/A2/343:348 | No text annotation | ||
| IL_7NWG_167 | 1/A2/144:151, 1/A2/167:175 | No text annotation | ||
| IL_7NWG_327 | 1/A2/152:154, 1/A2/164:166 | No text annotation | homologous IL_8P9A_384 IL_23751.1 | |
| IL_7NWG_170 | 1/A2/216:221, 1/A2/300:309 | No text annotation | ||
| IL_7NWG_328 | 1/A2/359:365, 1/A2/395:403 | No text annotation | ||
| IL_7NWG_329 | 1/A2/366:371, 1/A2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_7NWG_174 | 1/A2/409:411, 1/A2/429:432 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_7NWG_287 | 1/A2/409:413, 1/A2/424:432 | No text annotation | ||
| IL_7NWG_175 | 1/A2/411:413, 1/A2/424:429 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7NWG_176 | 1/A2/437:439, 1/A2/454:456 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_7NWG_177 | 1/A2/487:489, 1/A2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_7NWG_178 | 1/A2/491:496, 1/A2/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_7NWG_179 | 1/A2/529:531, 1/A2/553:556 | No text annotation | ||
| IL_7NWG_181 | 1/A2/563:565, 1/A2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7NWG_182 | 1/A2/599:608, 1/A2/635:637 | Other IL | geometric IL_7A0S_092 IL_10892.1 | |
| IL_7NWG_183 | 1/A2/611:617, 1/A2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7NWG_184 | 1/A2/676:681, 1/A2/1024:1029 | No text annotation | ||
| IL_7NWG_330 | 1/A2/802:803, 1/A2/860:863 | No text annotation | homologous IL_8P9A_412 IL_73108.1 | |
| IL_7NWG_188 | 1/A2/805:807, 1/A2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7NWG_288 | 1/A2/805:816, 1/A2/848:858 | No text annotation | ||
| IL_7NWG_189 | 1/A2/807:816, 1/A2/848:856 | No text annotation | ||
| IL_7NWG_289 | 1/A2/816:831, 1/A2/843:848 | No text annotation | ||
| IL_7NWG_192 | 1/A2/922:923, 1/A2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7NWG_331 | 1/A2/925:927, 1/A2/1014:1017 | Isolated cWH basepair | homologous IL_8CRE_432 IL_10892.1 | |
| IL_7NWG_332 | 1/A2/927:935, 1/A2/1007:1014 | No text annotation | ||
| IL_7NWG_333 | 1/A2/942:945, 1/A2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.1 | |
| IL_7NWG_334 | 1/A2/952:956, 1/A2/967:974 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_7NWG_197 | 1/A2/1042:1047, 1/A2/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_7NWG_198 | 1/A2/1047:1051, 1/A2/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7NWG_292 | 1/A2/1091:1103, 1/A2/1129:1158 | No text annotation | ||
| IL_7NWG_199 | 1/A2/1098:1103, 1/A2/1129:1134 | No text annotation | ||
| IL_7NWG_200 | 1/A2/1108:1110, 1/A2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7NWG_201 | 1/A2/1168:1175, 1/A2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7NWG_335 | 1/A2/1202:1208, 1/A2/1691:1697 | No text annotation | ||
| IL_7NWG_202 | 1/A2/1203:1206, 1/A2/1692:1696 | No text annotation | ||
| IL_7NWG_203 | 1/A2/1206:1209, 1/A2/1690:1692 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.1 | |
| IL_7NWG_204 | 1/A2/1214:1217, 1/A2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_7NWG_205 | 1/A2/1227:1228, 1/A2/1530:1532 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_7NWG_206 | 1/A2/1230:1235, 1/A2/1523:1528 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_7NWG_296 | 1/A2/1230:1236, 1/A2/1521:1528 | No text annotation | ||
| IL_7NWG_207 | 1/A2/1235:1236, 1/A2/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7NWG_208 | 1/A2/1268:1269, 1/A2/1513:1515 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7NWG_209 | 1/A2/1325:1327, 1/A2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7NWG_210 | 1/A2/1328:1333, 1/A2/1498:1501 | No text annotation | geometric IL_5J7L_362 NA | |
| IL_7NWG_336 | 1/A2/1328:1335, 1/A2/1492:1501 | No text annotation | ||
| IL_7NWG_211 | 1/A2/1333:1335, 1/A2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7NWG_212 | 1/A2/1336:1340, 1/A2/1486:1491 | No text annotation | geometric IL_8C3A_009 NA | |
| IL_7NWG_213 | 1/A2/1347:1349, 1/A2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7NWG_214 | 1/A2/1363:1365, 1/A2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_7NWG_215 | 1/A2/1395:1399, 1/A2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_7NWG_298 | 1/A2/1395:1401, 1/A2/1445:1450 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_7NWG_337 | 1/A2/1402:1405, 1/A2/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.2 | |
| IL_7NWG_218 | 1/A2/1537:1539, 1/A2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_7NWG_300 | 1/A2/1540:1558, 1/A2/1577:1593 | No text annotation | ||
| IL_7NWG_219 | 1/A2/1550:1558, 1/A2/1577:1583 | No text annotation | ||
| IL_7NWG_220 | 1/A2/1560:1562, 1/A2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_7NWG_221 | 1/A2/1702:1705, 1/A2/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_7NWG_222 | 1/A2/1706:1708, 1/A2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_7NWG_338 | 1/A2/1706:1711, 1/A2/1822:1828 | No text annotation | ||
| IL_7NWG_223 | 1/A2/1708:1711, 1/A2/1822:1826 | No text annotation | geometric IL_8CRE_469 IL_28833.1 | |
| IL_7NWG_303 | 1/A2/1714:1722, 1/A2/1812:1819 | No text annotation | ||
| IL_7NWG_304 | 1/A2/1729:1732, 1/A2/1802:1805 | No text annotation | ||
| IL_7NWG_226 | 1/A2/1731:1732, 1/A2/1802:1804 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7NWG_227 | 1/A2/1733:1736, 1/A2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7NWG_228 | 1/A2/1737:1739, 1/A2/1796:1797 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7NWG_229 | 1/A2/1740:1741, 1/A2/1793:1795 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_7NWG_230 | 1/A2/1742:1746, 1/A2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_7NWG_232 | 1/q3/49:51, 1/q3/64:65 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_7NWG_233 | 1/q3/51:52, 1/q3/62:64 | Single stack bend | geometric IL_4V9F_081 IL_15011.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NWG_002 | Isolated non-canonical cWW pair | ||
| IL_7NWG_235 | No text annotation | ||
| IL_7NWG_013 | No text annotation | ||
| IL_7NWG_014 | Single stack bend | ||
| IL_7NWG_015 | No text annotation | ||
| IL_7NWG_237 | No text annotation | ||
| IL_7NWG_023 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_238 | Isolated non-canonical cWW pair | ||
| IL_7NWG_024 | Single bulged C | ||
| IL_7NWG_240 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_027 | Single bulged U | ||
| IL_7NWG_028 | No text annotation | ||
| IL_7NWG_241 | Single stack bend with SAM intercalation | ||
| IL_7NWG_029 | Single stack bend | ||
| IL_7NWG_030 | Isolated non-canonical cWW pair | ||
| IL_7NWG_031 | No text annotation | ||
| IL_7NWG_243 | No text annotation | ||
| IL_7NWG_033 | No text annotation | ||
| IL_7NWG_038 | Single stack bend | ||
| IL_7NWG_040 | No text annotation | ||
| IL_7NWG_041 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_246 | Isolated non-canonical cWW pair | ||
| IL_7NWG_043 | Single stack bend | ||
| IL_7NWG_248 | No text annotation | ||
| IL_7NWG_049 | Single stack bend | ||
| IL_7NWG_050 | No text annotation | ||
| IL_7NWG_249 | No text annotation | ||
| IL_7NWG_061 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_250 | Partly complementary | ||
| IL_7NWG_063 | No text annotation | ||
| IL_7NWG_066 | No text annotation | ||
| IL_7NWG_069 | No text annotation | ||
| IL_7NWG_253 | No text annotation | ||
| IL_7NWG_254 | No text annotation | ||
| IL_7NWG_255 | No text annotation | ||
| IL_7NWG_256 | No text annotation | ||
| IL_7NWG_088 | Double sheared with non-canonical cWW | ||
| IL_7NWG_259 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_096 | No text annotation | ||
| IL_7NWG_260 | No text annotation | ||
| IL_7NWG_263 | No text annotation | ||
| IL_7NWG_104 | No text annotation | ||
| IL_7NWG_264 | No text annotation | ||
| IL_7NWG_265 | No text annotation | ||
| IL_7NWG_110 | No text annotation | ||
| IL_7NWG_266 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_267 | No text annotation | ||
| IL_7NWG_268 | Isolated non-canonical cWW with bulges | ||
| IL_7NWG_269 | No text annotation | ||
| IL_7NWG_270 | No text annotation | ||
| IL_7NWG_129 | No text annotation | ||
| IL_7NWG_271 | No text annotation | ||
| IL_7NWG_134 | No text annotation | ||
| IL_7NWG_135 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_140 | No text annotation | ||
| IL_7NWG_274 | Isolated non-canonical cWW with bulges | ||
| IL_7NWG_278 | No text annotation | ||
| IL_7NWG_152 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
| IL_7NWG_281 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_282 | No text annotation | ||
| IL_7NWG_283 | No text annotation | ||
| IL_7NWG_166 | No text annotation | ||
| IL_7NWG_168 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_169 | Double sheared with non-canonical cWW | ||
| IL_7NWG_171 | Single bulged A | ||
| IL_7NWG_285 | No text annotation | ||
| IL_7NWG_172 | No text annotation | ||
| IL_7NWG_173 | No text annotation | ||
| IL_7NWG_286 | No text annotation | ||
| IL_7NWG_180 | No text annotation | ||
| IL_7NWG_185 | Isolated non-canonical cWW pair | ||
| IL_7NWG_186 | No text annotation | ||
| IL_7NWG_187 | Major groove minor groove platform with extra cWW | ||
| IL_7NWG_190 | No text annotation | ||
| IL_7NWG_191 | Isolated non-canonical cWW pair | ||
| IL_7NWG_290 | Partly complementary | ||
| IL_7NWG_193 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_194 | No text annotation | ||
| IL_7NWG_195 | Triple non-canonical cWW pairs | ||
| IL_7NWG_291 | No text annotation | ||
| IL_7NWG_196 | No text annotation | ||
| IL_7NWG_293 | No text annotation | ||
| IL_7NWG_294 | No text annotation | ||
| IL_7NWG_295 | No text annotation | ||
| IL_7NWG_297 | No text annotation | ||
| IL_7NWG_216 | No text annotation | ||
| IL_7NWG_217 | No text annotation | ||
| IL_7NWG_299 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_301 | Tandem non-canonical cWW pairs | ||
| IL_7NWG_302 | No text annotation | ||
| IL_7NWG_224 | No text annotation | ||
| IL_7NWG_225 | No text annotation | ||
| IL_7NWG_305 | Double sheared with near cWW | ||
| IL_7NWG_231 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7NWG_023 | 1/51/196:201, 1/51/214:228, 1/51/240:244 | No text annotation | ||
| J3_7NWG_001 | 1/51/380:387, 1/51/414:415, 1/81/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7NWG_024 | 1/51/451:455, 1/51/701:705, 1/51/1292:1296 | No text annotation | ||
| J3_7NWG_047 | 1/51/709:713, 1/51/955:978, 1/51/1278:1288 | No text annotation | ||
| J3_7NWG_002 | 1/51/712:713, 1/51/955:978, 1/51/1278:1284 | No text annotation | ||
| J3_7NWG_005 | 1/51/1530:1537, 1/51/1622:1624, 1/51/1640:1644 | No text annotation | ||
| J3_7NWG_026 | 1/51/1542:1548, 1/51/1580:1592, 1/51/1603:1617 | No text annotation | ||
| J3_7NWG_006 | 1/51/1544:1548, 1/51/1580:1585, 1/51/1608:1615 | No text annotation | ||
| J3_7NWG_048 | 1/51/1723:1727, 1/51/1802:1806, 1/51/1832:1839 | No text annotation | ||
| J3_7NWG_049 | 1/51/2393:2399, 1/51/2805:2809, 1/51/2817:2822 | No text annotation | ||
| J3_7NWG_008 | 1/51/2402:2405, 1/51/2785:2791, 1/51/2800:2802 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7NWG_050 | 1/51/2439:2445, 1/51/2515:2519, 1/51/2536:2538 | No text annotation | ||
| J3_7NWG_031 | 1/51/2451:2456, 1/51/2465:2479, 1/51/2499:2508 | No text annotation | ||
| J3_7NWG_032 | 1/51/3695:3707, 1/51/3743:3792, 1/51/3808:3820 | No text annotation | ||
| J3_7NWG_009 | 1/51/3937:3939, 1/51/4074:4078, 1/51/4168:4173 | No text annotation | ||
| J3_7NWG_051 | 1/51/3937:3939, 1/51/4074:4079, 1/51/4167:4173 | No text annotation | geometric J3_4WF9_007 J3_07703.1 | |
| J3_7NWG_052 | 1/51/4091:4095, 1/51/4114:4130, 1/51/4154:4158 | No text annotation | ||
| J3_7NWG_035 | 1/51/4228:4230, 1/51/4331:4342, 1/51/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7NWG_010 | 1/51/4241:4243, 1/51/4267:4269, 1/51/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7NWG_011 | 1/51/4463:4466, 1/51/4491:4494, 1/51/4506:4513 | No text annotation | geometric J3_4V9F_009 J3_68010.1 | |
| J3_7NWG_053 | 1/51/4748:4754, 1/51/4879:4884, 1/51/4935:4952 | No text annotation | ||
| J3_7NWG_012 | 1/51/4970:4972, 1/51/4986:4991, 1/51/5060:5063 | No text annotation | ||
| J3_7NWG_038 | 1/51/4970:4975, 1/51/4983:4991, 1/51/5060:5063 | No text annotation | ||
| J3_7NWG_039 | 1/71/3:14, 1/71/65:66, 1/71/109:116 | No text annotation | ||
| J3_7NWG_013 | 1/71/7:14, 1/71/65:66, 1/71/109:112 | No text annotation | ||
| J3_7NWG_014 | 1/81/43:45, 1/81/58:64, 1/81/95:100 | No text annotation | ||
| J3_7NWG_054 | 1/81/44:45, 1/81/58:66, 1/81/92:99 | No text annotation | ||
| J3_7NWG_015 | 1/A2/40:41, 1/A2/481:487, 1/A2/512:514 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_7NWG_041 | 1/A2/673:685, 1/A2/917:923, 1/A2/1019:1032 | No text annotation | ||
| J3_7NWG_016 | 1/A2/682:685, 1/A2/917:922, 1/A2/1022:1023 | No text annotation | ||
| J3_7NWG_017 | 1/A2/816:819, 1/A2/829:831, 1/A2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_7NWG_018 | 1/A2/938:941, 1/A2/985:994, 1/A2/999:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7NWG_019 | 1/A2/1091:1098, 1/A2/1134:1140, 1/A2/1147:1158 | No text annotation | ||
| J3_7NWG_042 | 1/A2/1218:1221, 1/A2/1645:1651, 1/A2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_7NWG_055 | 1/A2/1224:1228, 1/A2/1530:1536, 1/A2/1597:1642 | No text annotation | ||
| J3_7NWG_020 | 1/A2/1237:1245, 1/A2/1254:1267, 1/A2/1516:1520 | No text annotation | ||
| J3_7NWG_044 | 1/A2/1270:1290, 1/A2/1309:1327, 1/A2/1502:1512 | No text annotation | ||
| J3_7NWG_056 | 1/A2/1337:1349, 1/A2/1380:1389, 1/A2/1481:1490 | No text annotation | ||
| J3_7NWG_021 | 1/A2/1340:1345, 1/A2/1384:1389, 1/A2/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7NWG_022 | 1/A2/1350:1351, 1/A2/1360:1363, 1/A2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7NWG_046 | 1/A2/1391:1395, 1/A2/1450:1456, 1/A2/1470:1479 | No text annotation | ||
| J4_7NWG_012 | 1/51/111:116, 1/51/155:166, 1/51/269:284, 1/51/303:330 | No text annotation | ||
| J4_7NWG_013 | 1/51/1313:1314, 1/51/1329:1330, 1/51/2356:2357, 1/51/3864:3879 | No text annotation | ||
| J4_7NWG_003 | 1/51/2365:2371, 1/51/2389:2392, 1/51/2823:2838, 1/51/3850:3857 | No text annotation | ||
| J4_7NWG_014 | 1/51/2406:2412, 1/51/2432:2439, 1/51/2538:2539, 1/51/2777:2784 | No text annotation | ||
| J4_7NWG_015 | 1/51/2549:2555, 1/51/2572:2576, 1/51/2585:2595, 1/51/2750:2770 | No text annotation | ||
| J4_7NWG_016 | 1/51/2618:2619, 1/51/2637:2642, 1/51/2692:2702, 1/51/2714:2719 | No text annotation | ||
| J4_7NWG_017 | 1/51/3629:3640, 1/51/3649:3655, 1/51/3689:3695, 1/51/3820:3832 | No text annotation | ||
| J4_7NWG_018 | 1/51/3696:3707, 1/51/3743:3756, 1/51/3768:3792, 1/51/3808:3819 | No text annotation | ||
| J4_7NWG_019 | 1/51/3913:3923, 1/51/4188:4192, 1/51/4202:4228, 1/51/4375:4389 | No text annotation | ||
| J4_7NWG_020 | 1/51/4231:4238, 1/51/4286:4291, 1/51/4318:4319, 1/51/4328:4330 | No text annotation | ||
| J4_7NWG_010 | 1/51/4587:4592, 1/51/4618:4621, 1/51/4676:4678, 1/51/4712:4715 | No text annotation | ||
| J4_7NWG_021 | 1/q3/7:10, 1/q3/25:28, 1/q3/42:49, 1/q3/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J5_7NWG_001 | 1/51/1332:1340, 1/51/1516:1522, 1/51/1655:1661, 1/51/2288:2290, 1/51/2345:2354 | No text annotation | ||
| J5_7NWG_002 | 1/51/1352:1355, 1/51/1384:1399, 1/51/1418:1421, 1/51/1464:1468, 1/51/1496:1504 | No text annotation | ||
| J5_7NWG_003 | 1/51/2405:2412, 1/51/2432:2445, 1/51/2515:2520, 1/51/2535:2539, 1/51/2777:2785 | No text annotation | ||
| J5_7NWG_010 | 1/51/2406:2412, 1/51/2432:2445, 1/51/2515:2519, 1/51/2536:2539, 1/51/2777:2784 | No text annotation | ||
| J5_7NWG_011 | 1/51/2846:2863, 1/51/2887:2888, 1/51/3613:3614, 1/51/3618:3626, 1/51/3835:3842 | No text annotation | ||
| J5_7NWG_012 | 1/51/3903:3911, 1/51/4391:4400, 1/51/4444:4453, 1/51/4528:4539, 1/51/4546:4557 | No text annotation | ||
| J5_7NWG_006 | 1/51/3911:3923, 1/51/4188:4192, 1/51/4202:4230, 1/51/4331:4342, 1/51/4370:4391 | No text annotation | ||
| J5_7NWG_013 | 1/51/3913:3923, 1/51/4188:4192, 1/51/4202:4230, 1/51/4331:4342, 1/51/4370:4389 | No text annotation | ||
| J5_7NWG_007 | 1/A2/30:36, 1/A2/519:527, 1/A2/558:563, 1/A2/592:595, 1/A2/641:644 | No text annotation | ||
| J5_7NWG_008 | 1/A2/30:36, 1/A2/519:527, 1/A2/558:565, 1/A2/585:595, 1/A2/641:644 | No text annotation | ||
| J5_7NWG_009 | 1/A2/123:130, 1/A2/182:187, 1/A2/212:215, 1/A2/310:312, 1/A2/337:341 | No text annotation | ||
| J6_7NWG_002 | 1/A2/1085:1089, 1/A2/1160:1166, 1/A2/1193:1202, 1/A2/1697:1702, 1/A2/1833:1843, 1/A2/1856:1861 | No text annotation | ||
| J7_7NWG_003 | 1/51/1666:1671, 1/51/1684:1686, 1/51/1851:1857, 1/51/1877:1884, 1/51/1895:1899, 1/51/2077:2085, 1/51/2272:2283 | No text annotation | ||
| J7_7NWG_002 | 1/A2/53:62, 1/A2/86:106, 1/A2/355:358, 1/A2/404:409, 1/A2/432:436, 1/A2/457:461, 1/A2/468:474 | No text annotation | ||
| J9_7NWG_002 | 1/51/19:26, 1/51/57:67, 1/51/74:78, 1/51/105:109, 1/51/332:339, 1/81/33:42, 1/81/101:106, 1/81/113:114, 1/81/136:138 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NWG_025 | No text annotation | ||
| J3_7NWG_003 | No text annotation | ||
| J3_7NWG_004 | No text annotation | ||
| J3_7NWG_027 | No text annotation | ||
| J3_7NWG_028 | No text annotation | ||
| J3_7NWG_007 | No text annotation | ||
| J3_7NWG_029 | No text annotation | ||
| J3_7NWG_030 | No text annotation | ||
| J3_7NWG_033 | No text annotation | ||
| J3_7NWG_034 | No text annotation | ||
| J3_7NWG_036 | No text annotation | ||
| J3_7NWG_037 | No text annotation | ||
| J3_7NWG_040 | No text annotation | ||
| J3_7NWG_043 | No text annotation | ||
| J3_7NWG_045 | No text annotation | ||
| J4_7NWG_001 | No text annotation | ||
| J4_7NWG_002 | No text annotation | ||
| J4_7NWG_004 | No text annotation | ||
| J4_7NWG_005 | No text annotation | ||
| J4_7NWG_006 | No text annotation | ||
| J4_7NWG_007 | No text annotation | ||
| J4_7NWG_008 | No text annotation | ||
| J4_7NWG_009 | No text annotation | ||
| J4_7NWG_011 | No text annotation | ||
| J5_7NWG_004 | No text annotation | ||
| J5_7NWG_005 | No text annotation | ||
| J6_7NWG_001 | No text annotation | ||
| J7_7NWG_001 | No text annotation | ||
| J9_7NWG_001 | No text annotation |
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