Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NWG_1191/33/52:60T-loop with 2 stacked bulged bases
homologous
HL_3TUP_003
HL_28252.9
HL_7NWG_0021/51/30:52No text annotation
HL_7NWG_1471/51/68:73No text annotation
homologous
HL_8P9A_114
HL_53890.2
HL_7NWG_0041/51/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_7NWG_0051/51/131:137No text annotation
geometric
HL_7A0S_011
HL_75660.5
HL_7NWG_1481/51/203:212No text annotation
HL_7NWG_0061/51/205:211No text annotation
HL_7NWG_0071/51/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7NWG_0081/51/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7NWG_0091/51/288:299No text annotation
HL_7NWG_0101/51/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7NWG_0111/51/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7NWG_0121/51/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7NWG_0161/51/1178:1183No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7NWG_1491/51/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8CRE_013
HL_28252.9
HL_7NWG_0191/51/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7NWG_0221/51/1479:1486No text annotation
homologous
HL_8C3A_018
NA
HL_7NWG_1501/51/1550:1578No text annotation
HL_7NWG_0231/51/1551:1576No text annotation
HL_7NWG_0241/51/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_7NWG_0251/51/1624:1640No text annotation
HL_7NWG_0261/51/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7NWG_0271/51/1763:1769GNRA
homologous
HL_5TBW_023
NA
HL_7NWG_0281/51/1814:1824No text annotation
HL_7NWG_1511/51/1864:1870GNRA
homologous
HL_8CRE_024
HL_37824.8
HL_7NWG_0301/51/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_7NWG_0311/51/1977:1989No text annotation
HL_7NWG_0321/51/2006:2013GNRA wlth tandem sheared
geometric
HL_4WF9_004
HL_81538.2
HL_7NWG_0341/51/2317:2322GNRA
homologous
HL_5TBW_030
NA
HL_7NWG_0351/51/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7NWG_1521/51/2415:2429No text annotation
HL_7NWG_0371/51/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7NWG_0381/51/2487:2491Externally structured
geometric
HL_8C3A_022
NA
HL_7NWG_0391/51/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_7NWG_0401/51/2559:2568No text annotation
geometric
HL_2Y9H_005
HL_86870.2
HL_7NWG_0411/51/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7NWG_0421/51/2624:2632No text annotation
homologous
HL_5TBW_037
NA
HL_7NWG_0431/51/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_7NWG_0441/51/2704:2712No text annotation
geometric
HL_2Y9H_005
HL_86870.2
HL_7NWG_0451/51/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_7NWG_0461/51/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_7NWG_1531/51/2867:2883No text annotation
HL_7NWG_0471/51/2872:2877No text annotation
geometric
HL_7RQB_042
NA
HL_7NWG_0491/51/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7NWG_0501/51/3640:3649No text annotation
HL_7NWG_1321/51/3658:3686No text annotation
HL_7NWG_0511/51/3665:3677No text annotation
geometric
HL_7VTI_001
HL_48417.6
HL_7NWG_0521/51/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_7NWG_0531/51/3757:3767No text annotation
HL_7NWG_0541/51/3794:3806No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_7NWG_0551/51/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7NWG_0581/51/4193:4201No text annotation
homologous
HL_5TBW_054
NA
HL_7NWG_0591/51/4207:4225No text annotation
HL_7NWG_0601/51/4250:4258No text annotation
homologous
HL_5TBW_056
NA
HL_7NWG_0611/51/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_7NWG_0621/51/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7NWG_0631/51/4319:4328No text annotation
HL_7NWG_0641/51/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7NWG_1341/51/4400:4444No text annotation
HL_7NWG_0651/51/4416:4426No text annotation
HL_7NWG_0661/51/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_7NWG_1541/51/4495:4505No text annotation
HL_7NWG_0671/51/4497:4503No text annotation
homologous
HL_5TBW_063
NA
HL_7NWG_0681/51/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_7NWG_0691/51/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_7NWG_1371/51/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7NWG_1551/51/4680:4710No text annotation
HL_7NWG_0711/51/4686:4704No text annotation
HL_7NWG_0731/51/4906:4915No text annotation
HL_7NWG_0741/51/4975:4983No text annotation
homologous
HL_5TBW_070
NA
HL_7NWG_0761/71/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7NWG_1391/71/79:97No text annotation
HL_7NWG_0771/71/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7NWG_0781/81/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_7NWG_0791/81/68:90No text annotation
HL_7NWG_0801/81/106:113No text annotation
geometric
HL_2Y9H_005
HL_86870.2
HL_7NWG_0811/81/121:129No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7NWG_0821/A2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_7NWG_0831/A2/62:86No text annotation
HL_7NWG_0841/A2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_7NWG_0851/A2/196:203T-loop with 2 bulged bases not stacked
geometric
HL_4FRG_001
HL_01609.3
HL_7NWG_0881/A2/377:387tRNA D-loop
geometric
HL_5WWT_001
HL_45175.1
HL_7NWG_0891/A2/414:423No text annotation
HL_7NWG_1561/A2/437:456No text annotation
HL_7NWG_0901/A2/439:454No text annotation
HL_7NWG_0911/A2/462:467UNCG
homologous
HL_4V88_196
NA
HL_7NWG_1571/A2/498:504No text annotation
homologous
HL_8CRE_202
HL_48417.6
HL_7NWG_0931/A2/538:545GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_7NWG_0941/A2/565:585No text annotation
HL_7NWG_0951/A2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_7NWG_0961/A2/819:829No text annotation
HL_7NWG_0981/A2/884:902No text annotation
homologous
HL_8C3A_210
NA
HL_7NWG_0991/A2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_7NWG_1001/A2/994:999GNRA
homologous
HL_4V88_207
NA
HL_7NWG_1011/A2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_7NWG_1021/A2/1114:1119Externally structured
geometric
HL_5TBW_022
NA
HL_7NWG_1031/A2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_7NWG_1041/A2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_7NWG_1051/A2/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_7NWG_1061/A2/1290:1309No text annotation
HL_7NWG_1071/A2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_7NWG_1081/A2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_7NWG_1101/A2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_7NWG_1111/A2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_7NWG_1121/A2/1613:1626No text annotation
geometric
HL_8KAH_003
NA
HL_7NWG_1131/A2/1656:1668No text annotation
HL_7NWG_1151/A2/1847:1852GNRA variation
homologous
HL_4V88_222
NA
HL_7NWG_1161/q3/11:24No text annotation
homologous
HL_4V9I_038
HL_68572.1
HL_7NWG_1171/q3/31:39No text annotation
homologous
HL_4YCP_002
NA
HL_7NWG_1181/q3/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V90_034
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_7NWG_001No text annotation
HL_7NWG_120No text annotation
HL_7NWG_003No text annotation
HL_7NWG_121No text annotation
HL_7NWG_122No text annotation
HL_7NWG_123tRNA anticodon loop
HL_7NWG_013Externally structured
HL_7NWG_014No text annotation
HL_7NWG_015No text annotation
HL_7NWG_124No text annotation
HL_7NWG_017No text annotation
HL_7NWG_018No text annotation
HL_7NWG_020No text annotation
HL_7NWG_021No text annotation
HL_7NWG_125No text annotation
HL_7NWG_126No text annotation
HL_7NWG_029No text annotation
HL_7NWG_127No text annotation
HL_7NWG_033No text annotation
HL_7NWG_128No text annotation
HL_7NWG_036No text annotation
HL_7NWG_129No text annotation
HL_7NWG_130tRNA D-loop
HL_7NWG_131No text annotation
HL_7NWG_048No text annotation
HL_7NWG_056No text annotation
HL_7NWG_057No text annotation
HL_7NWG_133No text annotation
HL_7NWG_135No text annotation
HL_7NWG_136No text annotation
HL_7NWG_070tRNA anticodon loop
HL_7NWG_138No text annotation
HL_7NWG_072No text annotation
HL_7NWG_075Externally structured
HL_7NWG_140No text annotation
HL_7NWG_086No text annotation
HL_7NWG_087No text annotation
HL_7NWG_141No text annotation
HL_7NWG_142No text annotation
HL_7NWG_143No text annotation
HL_7NWG_092No text annotation
HL_7NWG_144tRNA D-loop
HL_7NWG_097No text annotation
HL_7NWG_145No text annotation
HL_7NWG_109No text annotation
HL_7NWG_114No text annotation
HL_7NWG_146No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NWG_0011/33/1:2,
1/33/70:72
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7NWG_0021/33/3:5,
1/33/67:69
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7NWG_2341/33/3:51,
1/33/61:69
No text annotation
IL_7NWG_0031/33/5:51,
1/33/61:67
No text annotation
IL_7NWG_0041/51/10:14,
1/81/143:146
No text annotation
geometric
IL_1CSL_001
IL_25872.4
IL_7NWG_0051/51/16:18,
1/81/139:141
Isolated cWH basepair
geometric
IL_4J50_001
IL_10167.6
IL_7NWG_0061/51/26:27,
1/51/55:57
No text annotation
homologous
IL_8C3A_004
NA
IL_7NWG_3061/51/79:88,
1/51/96:104
No text annotation
IL_7NWG_0071/51/81:89,
1/51/95:102
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_7NWG_0081/51/118:123,
1/51/146:153
No text annotation
IL_7NWG_0091/51/123:126,
1/51/142:146
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_7NWG_0101/51/127:129,
1/51/140:141
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7NWG_0111/51/129:130,
1/51/138:140
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NWG_0121/51/168:174,
1/51/262:267
No text annotation
IL_7NWG_0131/51/174:177,
1/51/260:262
No text annotation
geometric
IL_4V87_185
NA
IL_7NWG_0141/51/177:178,
1/51/258:260
Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_7NWG_0161/51/195:196,
1/51/244:246
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_7NWG_0171/51/199:201,
1/51/214:215
Single bulged U
homologous
IL_8C3A_013
NA
IL_7NWG_0181/51/202:205,
1/51/211:213
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7NWG_0191/51/339:342,
1/81/32:33
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_7NWG_2361/51/345:379,
1/81/21:29
No text annotation
IL_7NWG_0201/51/387:390,
1/51/401:414
No text annotation
homologous
IL_5TBW_014
NA
IL_7NWG_0211/51/415:421,
1/81/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7NWG_3071/51/441:446,
1/51/1300:1306
No text annotation
IL_7NWG_0221/51/443:446,
1/51/1300:1304
No text annotation
IL_7NWG_3081/51/448:450,
1/51/1297:1298
No text annotation
IL_7NWG_0241/51/459:460,
1/51/695:697
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_7NWG_2391/51/462:472,
1/51/682:693
No text annotation
IL_7NWG_0251/51/481:485,
1/51/671:673
Isolated non-canonical cWW pair
geometric
IL_4V88_455
NA
IL_7NWG_0261/51/487:488,
1/51/665:669
Major groove intercalation
geometric
IL_1NBS_009
IL_82107.5
IL_7NWG_0271/51/491:493,
1/51/661:662
Single bulged U
geometric
IL_6UFG_004
IL_89505.4
IL_7NWG_2411/51/495:497,
1/51/658:659
Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
IL_90729.1
IL_7NWG_0291/51/497:499,
1/51/656:658
Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_7NWG_2421/51/508:510,
1/51/649:650
Single bulged A
geometric
IL_4V88_409
NA
IL_7NWG_0311/51/517:523,
1/51/638:644
No text annotation
IL_7NWG_0321/51/709:710,
1/51/1286:1288
Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_7NWG_3091/51/723:725,
1/51/941:945
No text annotation
IL_7NWG_0341/51/727:731,
1/51/938:939
No text annotation
IL_7NWG_2441/51/727:739,
1/51/923:939
No text annotation
IL_7NWG_0351/51/731:739,
1/51/923:938
No text annotation
IL_7NWG_0361/51/745:754,
1/51/909:919
No text annotation
IL_7NWG_2451/51/745:758,
1/51/906:919
No text annotation
IL_7NWG_0371/51/754:758,
1/51/906:909
No text annotation
IL_7NWG_0381/51/758:759,
1/51/904:906
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7NWG_0391/51/978:982,
1/51/1273:1278
No text annotation
IL_7NWG_3101/51/1082:1084,
1/51/1213:1217
Isolated near basepair
geometric
IL_7A0S_030
IL_42997.3
IL_7NWG_0421/51/1086:1087,
1/51/1209:1211
No text annotation
IL_7NWG_0431/51/1097:1098,
1/51/1197:1199
Single stack bend
geometric
IL_5TBW_009
NA
IL_7NWG_0441/51/1173:1178,
1/51/1183:1188
No text annotation
IL_7NWG_0451/51/1341:1343,
1/51/1514:1515
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NWG_0461/51/1343:1344,
1/51/1512:1514
Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_7NWG_2471/51/1343:1345,
1/51/1511:1514
No text annotation
geometric
IL_4P3T_002
NA
IL_7NWG_0471/51/1357:1360,
1/51/1379:1382
No text annotation
IL_7NWG_3111/51/1357:1361,
1/51/1376:1382
No text annotation
IL_7NWG_0481/51/1360:1361,
1/51/1376:1379
Major groove intercalation
geometric
IL_1U9S_003
IL_82107.5
IL_7NWG_0491/51/1402:1404,
1/51/1414:1415
Single stack bend
geometric
IL_5TBW_035
NA
IL_7NWG_0501/51/1404:1406,
1/51/1411C:1414
No text annotation
IL_7NWG_0511/51/1425:1429,
1/51/1455:1460
Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7NWG_0521/51/1467:1468,
1/51/1496:1498
Single bulged A
homologous
IL_5TBW_024
NA
IL_7NWG_0531/51/1469:1472,
1/51/1493:1495
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7NWG_0541/51/1472:1474,
1/51/1490:1493
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7NWG_0551/51/1474:1476,
1/51/1489:1490
No text annotation
IL_7NWG_0561/51/1520:1522,
1/51/1655:1657
Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7NWG_0571/51/1522:1526,
1/51/1648:1655
tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_7NWG_3121/51/1522:1537,
1/51/1622:1655
No text annotation
IL_7NWG_0581/51/1550:1551,
1/51/1576:1578
Single bulged G
geometric
IL_4LVW_002
IL_00225.14
IL_7NWG_0591/51/1585:1590,
1/51/1604:1608
No text annotation
IL_7NWG_0601/51/1590:1592,
1/51/1603:1604
Single bulged U
geometric
IL_5TBW_032
NA
IL_7NWG_3131/51/1671:1673,
1/51/1682:1684
Isolated non-canonical cWW pair
homologous
IL_8P9A_262
IL_28037.2
IL_7NWG_0621/51/1686:1688,
1/51/1848:1851
No text annotation
IL_7NWG_0641/51/1721:1725,
1/51/1838:1841
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_7NWG_0651/51/1732:1737,
1/51/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7NWG_3141/51/1737:1744,
1/51/1786:1792
No text annotation
IL_7NWG_0671/51/1745:1751,
1/51/1779:1785
No text annotation
IL_7NWG_0681/51/1753:1756,
1/51/1776:1777
Major groove platform
geometric
IL_4WF9_026
IL_48076.6
IL_7NWG_0691/51/1760:1763,
1/51/1769:1772
No text annotation
IL_7NWG_0701/51/1857:1861,
1/51/1873:1877
No text annotation
IL_7NWG_0711/51/1905:1909,
1/51/2067:2071
UAA/GAN
geometric
IL_5TBW_048
NA
IL_7NWG_0721/51/1909:1918,
1/51/2064:2067
No text annotation
IL_7NWG_2511/51/1909:1922,
1/51/2062:2067
No text annotation
IL_7NWG_0731/51/1918:1920,
1/51/2063:2064
No text annotation
IL_7NWG_0741/51/1920:1922,
1/51/2062:2063
No text annotation
IL_7NWG_0751/51/1925:1933,
1/51/2053:2059
No text annotation
IL_7NWG_2521/51/1926:1945,
1/51/2037:2058
No text annotation
IL_7NWG_0761/51/1933:1945,
1/51/2037:2053
No text annotation
IL_7NWG_0771/51/1946:1951,
1/51/2031:2036
Other IL
geometric
IL_4WF9_084
NA
IL_7NWG_3151/51/1946:1969,
1/51/2019:2036
No text annotation
IL_7NWG_0781/51/2083:2085,
1/51/2272:2273
No text annotation
IL_7NWG_0791/51/2290:2292,
1/51/2342:2345
No text annotation
homologous
IL_8C3A_061
NA
IL_7NWG_0801/51/2299:2301,
1/51/2334:2335
Single bulged A
homologous
IL_8C3A_062
NA
IL_7NWG_3161/51/2301:2314,
1/51/2325:2334
No text annotation
IL_7NWG_0811/51/2302:2309,
1/51/2329:2333
Kink-turn
homologous
IL_5TBW_059
NA
IL_7NWG_0821/51/2312:2314,
1/51/2325:2326
Single bulged A
homologous
IL_5TBW_060
NA
IL_7NWG_0831/51/2358:2364,
1/51/3858:3863
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7NWG_0841/51/2446:2450,
1/51/2509:2514
UAA/GAN
homologous
IL_5TBW_063
NA
IL_7NWG_0851/51/2542:2547,
1/51/2772:2774
Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_57744.1
IL_7NWG_3171/51/2598:2602,
1/51/2737:2747
No text annotation
IL_7NWG_0861/51/2613:2614,
1/51/2724:2726
Single bulged C
homologous
IL_8C3A_075
NA
IL_7NWG_0871/51/2614:2615,
1/51/2722:2724
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_7NWG_2571/51/2614:2616,
1/51/2721:2724
No text annotation
geometric
IL_8C3A_070
NA
IL_7NWG_3181/51/2646:2648,
1/51/2685:2688
No text annotation
IL_7NWG_0891/51/2651:2653,
1/51/2681:2682
Single bulged G
geometric
IL_3NDB_004
IL_00225.14
IL_7NWG_2581/51/2654:2662,
1/51/2672:2680
No text annotation
IL_7NWG_0901/51/2655:2662,
1/51/2672:2679
No text annotation
IL_7NWG_0911/51/2831:2838,
1/51/3850:3854
No text annotation
IL_7NWG_0921/51/2844:2846,
1/51/3842:3844
Isolated tWW turn
geometric
IL_7A0S_060
IL_67095.2
IL_7NWG_0931/51/2846:2855,
1/51/3837:3842
No text annotation
IL_7NWG_0941/51/2867:2872,
1/51/2877:2883
No text annotation
homologous
IL_8C3A_084
NA
IL_7NWG_0951/51/2889:2891,
1/51/3610:3612
Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_7NWG_0961/51/2896:2897,
1/51/3602:3605
No text annotation
homologous
IL_8C3A_086
NA
IL_7NWG_0971/51/3631:3633,
1/51/3827:3830
Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_87907.2
IL_7NWG_0981/51/3659:3665,
1/51/3677:3685
No text annotation
IL_7NWG_0991/51/3700:3705,
1/51/3745:3750
No text annotation
IL_7NWG_1001/51/3708:3710,
1/51/3741:3742
Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_7NWG_2611/51/3708:3721,
1/51/3732:3742
No text annotation
IL_7NWG_1011/51/3710:3713,
1/51/3740:3741
Multiple bulged bases
geometric
IL_5W1H_001
IL_82107.5
IL_7NWG_2621/51/3710:3721,
1/51/3732:3741
No text annotation
IL_7NWG_1021/51/3715:3721,
1/51/3732:3738
No text annotation
homologous
IL_5TBW_088
NA
IL_7NWG_1031/51/3895:3898,
1/51/4563:4565
No text annotation
homologous
IL_8C3A_096
NA
IL_7NWG_3191/51/3900:3902,
1/51/4558:4561
No text annotation
homologous
IL_8CRE_097
IL_83389.2
IL_7NWG_1051/51/3911:3915,
1/51/4388:4391
Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_7NWG_1061/51/3915:3920,
1/51/4381:4388
No text annotation
IL_7NWG_1071/51/3927:3929,
1/51/4181:4184
No text annotation
homologous
IL_8C3A_100
NA
IL_7NWG_3201/51/3927:3931,
1/51/4179:4184
No text annotation
IL_7NWG_1081/51/3943:3952,
1/51/4060:4070
No text annotation
IL_7NWG_2651/51/3955:3973,
1/51/4038:4057
No text annotation
IL_7NWG_1091/51/4082:4088,
1/51/4161:4164
No text annotation
homologous
IL_8C3A_106
NA
IL_7NWG_1101/51/4095:4097,
1/51/4110:4114
No text annotation
IL_7NWG_1111/51/4191:4192,
1/51/4202:4204
Single bulged A
homologous
IL_5TBW_098
NA
IL_7NWG_1121/51/4243:4245,
1/51/4263:4267
No text annotation
homologous
IL_8C3A_108
NA
IL_7NWG_1131/51/4291:4293,
1/51/4317:4318
No text annotation
IL_7NWG_3211/51/4291:4294,
1/51/4316:4318
Isolated non-canonical cWW pair
geometric
IL_8P9A_444
IL_87907.2
IL_7NWG_1141/51/4295:4297,
1/51/4314:4315
Single stack bend
geometric
IL_7RQB_091
NA
IL_7NWG_1151/51/4297:4298,
1/51/4312:4314
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7NWG_1161/51/4347:4350,
1/51/4364:4365
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NWG_1171/51/4400:4403,
1/51/4440:4444
No text annotation
homologous
IL_8C3A_111
NA
IL_7NWG_1181/51/4403:4408,
1/51/4434:4440
No text annotation
IL_7NWG_1191/51/4412:4416,
1/51/4426:4430
No text annotation
homologous
IL_8C3A_114
NA
IL_7NWG_1201/51/4453:4454,
1/51/4526:4528
Major groove platform
homologous
IL_5TBW_107
NA
IL_7NWG_1211/51/4456:4458,
1/51/4520:4524
No text annotation
homologous
IL_8C3A_116
NA
IL_7NWG_1221/51/4458:4459,
1/51/4517:4520
No text annotation
homologous
IL_8C3A_117
NA
IL_7NWG_1231/51/4466:4470,
1/51/4485:4491
No text annotation
IL_7NWG_1241/51/4495:4497,
1/51/4503:4505
Isolated non-canonical cWW pair
geometric
IL_5Y7M_007
IL_87907.2
IL_7NWG_1251/51/4537:4540,
1/51/4545:4549
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_7NWG_1261/51/4578:4582,
1/51/4721:4725
No text annotation
IL_7NWG_3221/51/4578:4585,
1/51/4717:4725
No text annotation
IL_7NWG_1271/51/4582:4586,
1/51/4716:4721
Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_7NWG_1281/51/4596:4603,
1/51/4608:4614
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7NWG_3231/51/4624:4629,
1/51/4669:4673
No text annotation
IL_7NWG_1301/51/4632:4637,
1/51/4662:4666
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7NWG_2721/51/4632:4643,
1/51/4654:4666
No text annotation
IL_7NWG_1311/51/4638:4641,
1/51/4658:4661
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_7NWG_1321/51/4641:4643,
1/51/4654:4658
Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_7NWG_1331/51/4680:4686,
1/51/4704:4710
No text annotation
IL_7NWG_1351/51/4743:4746,
1/51/4954:4957
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7NWG_1361/51/4756:4766,
1/51/4868:4877
No text annotation
IL_7NWG_2731/51/4756:4767,
1/51/4867:4877
No text annotation
IL_7NWG_1371/51/4769:4775,
1/51/4860:4865
No text annotation
IL_7NWG_1381/51/4885:4888,
1/51/4931:4934
Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_7NWG_1391/51/4890:4896,
1/51/4924:4929
No text annotation
IL_7NWG_1411/51/4972:4975,
1/51/4983:4986
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7NWG_1421/51/4992:4996,
1/51/5055:5059
No text annotation
geometric
IL_5TBW_121
NA
IL_7NWG_1431/51/4996:4997,
1/51/5053:5055
No text annotation
IL_7NWG_1441/51/4999:5003,
1/51/5044:5051
No text annotation
IL_7NWG_2751/51/4999:5009,
1/51/5039:5051
No text annotation
IL_7NWG_1451/51/5003:5009,
1/51/5039:5044
No text annotation
IL_7NWG_1461/51/5012:5014,
1/51/5035:5036
Single bulged U
homologous
IL_8C3A_140
NA
IL_7NWG_2761/51/5012:5017,
1/51/5032:5036
No text annotation
IL_7NWG_1471/51/5014:5017,
1/51/5032:5035
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7NWG_1481/71/15:16,
1/71/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_7NWG_2771/71/15:17,
1/71/61:64
Isolated non-canonical cWW pair
geometric
IL_7A0S_026
IL_87907.2
IL_7NWG_1491/71/19:27,
1/71/52:59
No text annotation
IL_7NWG_3241/71/20:30,
1/71/47:58
No text annotation
IL_7NWG_1501/71/27:30,
1/71/47:52
No text annotation
IL_7NWG_1511/71/31:36,
1/71/41:46
No text annotation
IL_7NWG_2791/71/71:78,
1/71/98:104
8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_148
NA
IL_7NWG_1531/71/79:81,
1/71/95:97
Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_7NWG_1541/71/82:85,
1/71/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7NWG_2801/81/43:66,
1/81/92:100
No text annotation
IL_7NWG_1551/81/64:66,
1/81/92:95
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_7NWG_1561/A2/23:25,
1/A2/649:651
Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_7NWG_1571/A2/34:36,
1/A2/519:521
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7NWG_1581/A2/37:40,
1/A2/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_7NWG_1591/A2/41:48,
1/A2/478:481
No text annotation
IL_7NWG_3251/A2/41:51,
1/A2/476:481
No text annotation
IL_7NWG_1601/A2/49:53,
1/A2/474:477
No text annotation
geometric
IL_1U6B_004
IL_64231.5
IL_7NWG_1611/A2/56:62,
1/A2/86:89
No text annotation
IL_7NWG_1621/A2/108:110,
1/A2/351:353
Isolated non-canonical cWW pair
geometric
IL_4TS2_004
IL_28037.2
IL_7NWG_3261/A2/108:112,
1/A2/349:353
Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_49751.4
IL_7NWG_1631/A2/110:112,
1/A2/349:351
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_7NWG_1641/A2/112:115,
1/A2/348:349
Major groove intercalation
geometric
IL_4WF9_071
IL_82107.5
IL_7NWG_2841/A2/112:121,
1/A2/343:349
No text annotation
IL_7NWG_1651/A2/115:121,
1/A2/343:348
No text annotation
IL_7NWG_1671/A2/144:151,
1/A2/167:175
No text annotation
IL_7NWG_3271/A2/152:154,
1/A2/164:166
No text annotation
homologous
IL_8P9A_384
IL_44465.1
IL_7NWG_1691/A2/188:192,
1/A2/207:211
Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_17948.2
IL_7NWG_1701/A2/216:221,
1/A2/300:309
No text annotation
IL_7NWG_1711/A2/312:314,
1/A2/336:337
Single bulged A
homologous
IL_4V88_399
NA
IL_7NWG_2851/A2/317:322,
1/A2/329:333
No text annotation
IL_7NWG_3281/A2/359:365,
1/A2/395:403
No text annotation
IL_7NWG_3291/A2/366:371,
1/A2/393:394
No text annotation
homologous
IL_8P9A_392
IL_47074.2
IL_7NWG_1741/A2/409:411,
1/A2/429:432
No text annotation
geometric
IL_4P3T_002
NA
IL_7NWG_2871/A2/409:413,
1/A2/424:432
No text annotation
IL_7NWG_1751/A2/411:413,
1/A2/424:429
No text annotation
geometric
IL_4V88_404
NA
IL_7NWG_1761/A2/437:439,
1/A2/454:456
Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_7NWG_1771/A2/487:489,
1/A2/511:512
Single bulged U
homologous
IL_4V88_407
NA
IL_7NWG_1781/A2/491:496,
1/A2/506:509
C-loop with extra cWW pair
homologous
IL_4V88_408
NA
IL_7NWG_1791/A2/529:531,
1/A2/553:556
No text annotation
IL_7NWG_1801/A2/534:538,
1/A2/545:550
No text annotation
IL_7NWG_1811/A2/563:565,
1/A2/585:592
No text annotation
homologous
IL_8C3A_420
NA
IL_7NWG_1821/A2/599:608,
1/A2/635:637
Other IL
geometric
IL_7A0S_092
IL_08770.1
IL_7NWG_1831/A2/611:617,
1/A2/624:632
Kink-turn related
homologous
IL_4V88_415
NA
IL_7NWG_1841/A2/676:681,
1/A2/1024:1029
No text annotation
IL_7NWG_1851/A2/692:694,
1/A2/732:734
Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_87907.2
IL_7NWG_1861/A2/754:758,
1/A2/786:791
No text annotation
IL_7NWG_3301/A2/802:803,
1/A2/860:863
No text annotation
homologous
IL_8P9A_412
IL_68140.4
IL_7NWG_1881/A2/805:807,
1/A2/856:858
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7NWG_2881/A2/805:816,
1/A2/848:858
No text annotation
IL_7NWG_1891/A2/807:816,
1/A2/848:856
No text annotation
IL_7NWG_2891/A2/816:831,
1/A2/843:848
No text annotation
IL_7NWG_1901/A2/874:877,
1/A2/909:914
No text annotation
IL_7NWG_1911/A2/877:879,
1/A2/907:909
Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7NWG_1921/A2/922:923,
1/A2/1019:1022
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7NWG_3311/A2/925:927,
1/A2/1014:1017
Isolated cWH basepair
homologous
IL_8CRE_432
IL_10167.6
IL_7NWG_3321/A2/927:935,
1/A2/1007:1014
No text annotation
IL_7NWG_3331/A2/942:945,
1/A2/981:984
Tandem non-canonical cWW pairs
homologous
IL_8P9A_421
IL_85033.2
IL_7NWG_3341/A2/952:956,
1/A2/967:974
Kink-turn
geometric
IL_6UFM_001
IL_01488.3
IL_7NWG_1971/A2/1042:1047,
1/A2/1071:1073
Other IL
homologous
IL_4V88_435
NA
IL_7NWG_1981/A2/1047:1051,
1/A2/1067:1071
tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_7NWG_2921/A2/1091:1103,
1/A2/1129:1158
No text annotation
IL_7NWG_1991/A2/1098:1103,
1/A2/1129:1134
No text annotation
IL_7NWG_2001/A2/1108:1110,
1/A2/1123:1124
Minor groove platform
geometric
IL_4V88_412
NA
IL_7NWG_2011/A2/1168:1175,
1/A2/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7NWG_3351/A2/1202:1208,
1/A2/1691:1697
No text annotation
IL_7NWG_2021/A2/1203:1206,
1/A2/1692:1696
No text annotation
IL_7NWG_2031/A2/1206:1209,
1/A2/1690:1692
Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_87907.2
IL_7NWG_2041/A2/1214:1217,
1/A2/1681:1685
C-loop
homologous
IL_4V88_443
NA
IL_7NWG_2051/A2/1227:1228,
1/A2/1530:1532
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_7NWG_2061/A2/1230:1235,
1/A2/1523:1528
No text annotation
geometric
IL_6O5F_001
NA
IL_7NWG_2961/A2/1230:1236,
1/A2/1521:1528
No text annotation
IL_7NWG_2071/A2/1235:1236,
1/A2/1521:1523
Minor groove platform
geometric
IL_4V88_445
NA
IL_7NWG_2081/A2/1268:1269,
1/A2/1513:1515
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NWG_2091/A2/1325:1327,
1/A2/1502:1503
Single bulged U
homologous
IL_4V88_449
NA
IL_7NWG_2101/A2/1328:1333,
1/A2/1498:1501
No text annotation
geometric
IL_5J7L_362
IL_49612.1
IL_7NWG_3361/A2/1328:1335,
1/A2/1492:1501
No text annotation
IL_7NWG_2111/A2/1333:1335,
1/A2/1492:1498
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_7NWG_2121/A2/1336:1340,
1/A2/1486:1491
No text annotation
geometric
IL_8C3A_009
NA
IL_7NWG_2131/A2/1347:1349,
1/A2/1380:1382
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_7NWG_2141/A2/1363:1365,
1/A2/1374:1375
Minor groove platform
homologous
IL_4V88_454
NA
IL_7NWG_2151/A2/1395:1399,
1/A2/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_7NWG_2981/A2/1395:1401,
1/A2/1445:1450
No text annotation
geometric
IL_6O5F_001
NA
IL_7NWG_3371/A2/1402:1405,
1/A2/1441:1444
No text annotation
homologous
IL_8CRE_481
IL_78800.1
IL_7NWG_2171/A2/1412:1414,
1/A2/1426:1429
No text annotation
IL_7NWG_2181/A2/1537:1539,
1/A2/1594:1596
Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_7NWG_3001/A2/1540:1558,
1/A2/1577:1593
No text annotation
IL_7NWG_2191/A2/1550:1558,
1/A2/1577:1583
No text annotation
IL_7NWG_2201/A2/1560:1562,
1/A2/1573:1575
Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_7NWG_2211/A2/1702:1705,
1/A2/1829:1833
No text annotation
homologous
IL_4V88_464
NA
IL_7NWG_2221/A2/1706:1708,
1/A2/1826:1828
Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_7NWG_3381/A2/1706:1711,
1/A2/1822:1828
No text annotation
IL_7NWG_2231/A2/1708:1711,
1/A2/1822:1826
No text annotation
geometric
IL_8CRE_469
IL_11399.2
IL_7NWG_3031/A2/1714:1722,
1/A2/1812:1819
No text annotation
IL_7NWG_2251/A2/1729:1731,
1/A2/1804:1805
No text annotation
IL_7NWG_3041/A2/1729:1732,
1/A2/1802:1805
No text annotation
IL_7NWG_2261/A2/1731:1732,
1/A2/1802:1804
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7NWG_2271/A2/1733:1736,
1/A2/1798:1801
Double sheared
homologous
IL_4V88_471
NA
IL_7NWG_2281/A2/1737:1739,
1/A2/1796:1797
Single stack bend
geometric
IL_5TBW_070
NA
IL_7NWG_2291/A2/1740:1741,
1/A2/1793:1795
Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_7NWG_2301/A2/1742:1746,
1/A2/1788:1792
Triple sheared
homologous
IL_4V88_474
NA
IL_7NWG_2311/A2/1750:1753,
1/A2/1779:1784
No text annotation
IL_7NWG_2321/q3/49:51,
1/q3/64:65
Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_7NWG_2331/q3/51:52,
1/q3/62:64
Single stack bend
geometric
IL_4V9F_081
IL_26793.1

Problematic loops

#loop idProblemSequence
IL_7NWG_235No text annotation
IL_7NWG_015No text annotation
IL_7NWG_237No text annotation
IL_7NWG_023Tandem non-canonical cWW pairs
IL_7NWG_238Isolated non-canonical cWW pair
IL_7NWG_240Tandem non-canonical cWW pairs
IL_7NWG_028No text annotation
IL_7NWG_030Isolated non-canonical cWW pair
IL_7NWG_243No text annotation
IL_7NWG_033No text annotation
IL_7NWG_040No text annotation
IL_7NWG_041Tandem non-canonical cWW pairs
IL_7NWG_246Isolated non-canonical cWW pair
IL_7NWG_248No text annotation
IL_7NWG_249No text annotation
IL_7NWG_061Tandem non-canonical cWW pairs
IL_7NWG_250Partly complementary
IL_7NWG_063No text annotation
IL_7NWG_066No text annotation
IL_7NWG_253No text annotation
IL_7NWG_254No text annotation
IL_7NWG_255No text annotation
IL_7NWG_256No text annotation
IL_7NWG_088Double sheared with non-canonical cWW
IL_7NWG_259Tandem non-canonical cWW pairs
IL_7NWG_260No text annotation
IL_7NWG_263No text annotation
IL_7NWG_104No text annotation
IL_7NWG_264No text annotation
IL_7NWG_266Tandem non-canonical cWW pairs
IL_7NWG_267No text annotation
IL_7NWG_268Isolated non-canonical cWW with bulges
IL_7NWG_269No text annotation
IL_7NWG_270No text annotation
IL_7NWG_129No text annotation
IL_7NWG_271No text annotation
IL_7NWG_134No text annotation
IL_7NWG_140No text annotation
IL_7NWG_274Isolated non-canonical cWW with bulges
IL_7NWG_278No text annotation
IL_7NWG_1529x8 Sarcin-Ricin with GA cWW pair; G-bulge
IL_7NWG_281Tandem non-canonical cWW pairs
IL_7NWG_282No text annotation
IL_7NWG_283No text annotation
IL_7NWG_166No text annotation
IL_7NWG_168Tandem non-canonical cWW pairs
IL_7NWG_172No text annotation
IL_7NWG_173No text annotation
IL_7NWG_286No text annotation
IL_7NWG_187Major groove minor groove platform with extra cWW
IL_7NWG_290Partly complementary
IL_7NWG_193Tandem non-canonical cWW pairs
IL_7NWG_194No text annotation
IL_7NWG_195Triple non-canonical cWW pairs
IL_7NWG_291No text annotation
IL_7NWG_196No text annotation
IL_7NWG_293No text annotation
IL_7NWG_294No text annotation
IL_7NWG_295No text annotation
IL_7NWG_297No text annotation
IL_7NWG_216No text annotation
IL_7NWG_299Tandem non-canonical cWW pairs
IL_7NWG_301Tandem non-canonical cWW pairs
IL_7NWG_302No text annotation
IL_7NWG_224No text annotation
IL_7NWG_305Double sheared with near cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7NWG_0231/51/196:201,
1/51/214:228,
1/51/240:244
No text annotation
J3_7NWG_0011/51/380:387,
1/51/414:415,
1/81/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_7NWG_0241/51/451:455,
1/51/701:705,
1/51/1292:1296
No text annotation
J3_7NWG_0471/51/709:713,
1/51/955:978,
1/51/1278:1288
No text annotation
J3_7NWG_0021/51/712:713,
1/51/955:978,
1/51/1278:1284
No text annotation
J3_7NWG_0041/51/1098:1108,
1/51/1162:1167,
1/51/1194:1197
No text annotation
J3_7NWG_0051/51/1530:1537,
1/51/1622:1624,
1/51/1640:1644
No text annotation
J3_7NWG_0261/51/1542:1548,
1/51/1580:1592,
1/51/1603:1617
No text annotation
J3_7NWG_0061/51/1544:1548,
1/51/1580:1585,
1/51/1608:1615
No text annotation
J3_7NWG_0481/51/1723:1727,
1/51/1802:1806,
1/51/1832:1839
No text annotation
J3_7NWG_0281/51/1969:1977,
1/51/1989:2005,
1/51/2014:2019
No text annotation
J3_7NWG_0491/51/2393:2399,
1/51/2805:2809,
1/51/2817:2822
No text annotation
J3_7NWG_0081/51/2402:2405,
1/51/2785:2791,
1/51/2800:2802
No text annotation
homologous
J3_5TBW_009
NA
J3_7NWG_0501/51/2439:2445,
1/51/2515:2519,
1/51/2536:2538
No text annotation
J3_7NWG_0311/51/2451:2456,
1/51/2465:2479,
1/51/2499:2508
No text annotation
J3_7NWG_0321/51/3695:3707,
1/51/3743:3792,
1/51/3808:3820
No text annotation
J3_7NWG_0091/51/3937:3939,
1/51/4074:4078,
1/51/4168:4173
No text annotation
J3_7NWG_0511/51/3937:3939,
1/51/4074:4079,
1/51/4167:4173
No text annotation
geometric
J3_4WF9_007
J3_07703.1
J3_7NWG_0521/51/4091:4095,
1/51/4114:4130,
1/51/4154:4158
No text annotation
J3_7NWG_0351/51/4228:4230,
1/51/4331:4342,
1/51/4370:4375
No text annotation
homologous
J3_8C3A_056
NA
J3_7NWG_0101/51/4241:4243,
1/51/4267:4269,
1/51/4278:4283
No text annotation
homologous
J3_8C3A_010
NA
J3_7NWG_0111/51/4463:4466,
1/51/4491:4494,
1/51/4506:4513
No text annotation
geometric
J3_4V9F_009
J3_69441.1
J3_7NWG_0531/51/4748:4754,
1/51/4879:4884,
1/51/4935:4952
No text annotation
J3_7NWG_0121/51/4970:4972,
1/51/4986:4991,
1/51/5060:5063
No text annotation
J3_7NWG_0381/51/4970:4975,
1/51/4983:4991,
1/51/5060:5063
No text annotation
J3_7NWG_0391/71/3:14,
1/71/65:66,
1/71/109:116
No text annotation
J3_7NWG_0131/71/7:14,
1/71/65:66,
1/71/109:112
No text annotation
J3_7NWG_0141/81/43:45,
1/81/58:64,
1/81/95:100
No text annotation
J3_7NWG_0541/81/44:45,
1/81/58:66,
1/81/92:99
No text annotation
J3_7NWG_0151/A2/40:41,
1/A2/481:487,
1/A2/512:514
No text annotation
homologous
J3_8P9A_068
J3_67856.4
J3_7NWG_0411/A2/673:685,
1/A2/917:923,
1/A2/1019:1032
No text annotation
J3_7NWG_0161/A2/682:685,
1/A2/917:922,
1/A2/1022:1023
No text annotation
J3_7NWG_0171/A2/816:819,
1/A2/829:831,
1/A2/843:848
No text annotation
homologous
J3_8P9A_073
J3_97642.1
J3_7NWG_0181/A2/938:941,
1/A2/985:994,
1/A2/999:1004
No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7NWG_0191/A2/1091:1098,
1/A2/1134:1140,
1/A2/1147:1158
No text annotation
J3_7NWG_0421/A2/1218:1221,
1/A2/1645:1651,
1/A2/1673:1680
No text annotation
homologous
J3_8P9A_076
J3_25303.4
J3_7NWG_0551/A2/1224:1228,
1/A2/1530:1536,
1/A2/1597:1642
No text annotation
J3_7NWG_0201/A2/1237:1245,
1/A2/1254:1267,
1/A2/1516:1520
No text annotation
J3_7NWG_0441/A2/1270:1290,
1/A2/1309:1327,
1/A2/1502:1512
No text annotation
J3_7NWG_0561/A2/1337:1349,
1/A2/1380:1389,
1/A2/1481:1490
No text annotation
J3_7NWG_0211/A2/1340:1345,
1/A2/1384:1389,
1/A2/1481:1486
No text annotation
homologous
J3_4V88_039
NA
J3_7NWG_0221/A2/1350:1351,
1/A2/1360:1363,
1/A2/1375:1379
No text annotation
homologous
J3_8C3A_085
NA
J3_7NWG_0461/A2/1391:1395,
1/A2/1450:1456,
1/A2/1470:1479
No text annotation
J4_7NWG_0121/51/111:116,
1/51/155:166,
1/51/269:284,
1/51/303:330
No text annotation
J4_7NWG_0131/51/1313:1314,
1/51/1329:1330,
1/51/2356:2357,
1/51/3864:3879
No text annotation
J4_7NWG_0031/51/2365:2371,
1/51/2389:2392,
1/51/2823:2838,
1/51/3850:3857
No text annotation
J4_7NWG_0141/51/2406:2412,
1/51/2432:2439,
1/51/2538:2539,
1/51/2777:2784
No text annotation
J4_7NWG_0151/51/2549:2555,
1/51/2572:2576,
1/51/2585:2595,
1/51/2750:2770
No text annotation
J4_7NWG_0161/51/2618:2619,
1/51/2637:2642,
1/51/2692:2702,
1/51/2714:2719
No text annotation
J4_7NWG_0171/51/3629:3640,
1/51/3649:3655,
1/51/3689:3695,
1/51/3820:3832
No text annotation
J4_7NWG_0181/51/3696:3707,
1/51/3743:3756,
1/51/3768:3792,
1/51/3808:3819
No text annotation
J4_7NWG_0191/51/3913:3923,
1/51/4188:4192,
1/51/4202:4228,
1/51/4375:4389
No text annotation
J4_7NWG_0201/51/4231:4238,
1/51/4286:4291,
1/51/4318:4319,
1/51/4328:4330
No text annotation
J4_7NWG_0101/51/4587:4592,
1/51/4618:4621,
1/51/4676:4678,
1/51/4712:4715
No text annotation
J4_7NWG_0211/q3/7:10,
1/q3/25:28,
1/q3/42:49,
1/q3/65:66
tRNA junction
homologous
J4_5WWT_001
J4_65285.1
J5_7NWG_0011/51/1332:1340,
1/51/1516:1522,
1/51/1655:1661,
1/51/2288:2290,
1/51/2345:2354
No text annotation
J5_7NWG_0021/51/1352:1355,
1/51/1384:1399,
1/51/1418:1421,
1/51/1464:1468,
1/51/1496:1504
No text annotation
J5_7NWG_0031/51/2405:2412,
1/51/2432:2445,
1/51/2515:2520,
1/51/2535:2539,
1/51/2777:2785
No text annotation
J5_7NWG_0101/51/2406:2412,
1/51/2432:2445,
1/51/2515:2519,
1/51/2536:2539,
1/51/2777:2784
No text annotation
J5_7NWG_0111/51/2846:2863,
1/51/2887:2888,
1/51/3613:3614,
1/51/3618:3626,
1/51/3835:3842
No text annotation
J5_7NWG_0121/51/3903:3911,
1/51/4391:4400,
1/51/4444:4453,
1/51/4528:4539,
1/51/4546:4557
No text annotation
J5_7NWG_0061/51/3911:3923,
1/51/4188:4192,
1/51/4202:4230,
1/51/4331:4342,
1/51/4370:4391
No text annotation
J5_7NWG_0131/51/3913:3923,
1/51/4188:4192,
1/51/4202:4230,
1/51/4331:4342,
1/51/4370:4389
No text annotation
J5_7NWG_0071/A2/30:36,
1/A2/519:527,
1/A2/558:563,
1/A2/592:595,
1/A2/641:644
No text annotation
J5_7NWG_0081/A2/30:36,
1/A2/519:527,
1/A2/558:565,
1/A2/585:595,
1/A2/641:644
No text annotation
J5_7NWG_0091/A2/123:130,
1/A2/182:187,
1/A2/212:215,
1/A2/310:312,
1/A2/337:341
No text annotation
J6_7NWG_0021/A2/1085:1089,
1/A2/1160:1166,
1/A2/1193:1202,
1/A2/1697:1702,
1/A2/1833:1843,
1/A2/1856:1861
No text annotation
J7_7NWG_0031/51/1666:1671,
1/51/1684:1686,
1/51/1851:1857,
1/51/1877:1884,
1/51/1895:1899,
1/51/2077:2085,
1/51/2272:2283
No text annotation
J7_7NWG_0021/A2/53:62,
1/A2/86:106,
1/A2/355:358,
1/A2/404:409,
1/A2/432:436,
1/A2/457:461,
1/A2/468:474
No text annotation
J9_7NWG_0021/51/19:26,
1/51/57:67,
1/51/74:78,
1/51/105:109,
1/51/332:339,
1/81/33:42,
1/81/101:106,
1/81/113:114,
1/81/136:138
No text annotation

Problematic loops

#loop idProblemSequence
J3_7NWG_025No text annotation
J3_7NWG_003No text annotation
J3_7NWG_027No text annotation
J3_7NWG_007No text annotation
J3_7NWG_029No text annotation
J3_7NWG_030No text annotation
J3_7NWG_033No text annotation
J3_7NWG_034No text annotation
J3_7NWG_036No text annotation
J3_7NWG_037No text annotation
J3_7NWG_040No text annotation
J3_7NWG_043No text annotation
J3_7NWG_045No text annotation
J4_7NWG_001No text annotation
J4_7NWG_002No text annotation
J4_7NWG_004No text annotation
J4_7NWG_005No text annotation
J4_7NWG_006No text annotation
J4_7NWG_007No text annotation
J4_7NWG_008No text annotation
J4_7NWG_009No text annotation
J4_7NWG_011No text annotation
J5_7NWG_004No text annotation
J5_7NWG_005No text annotation
J6_7NWG_001No text annotation
J7_7NWG_001No text annotation
J9_7NWG_001No text annotation

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