HL_7NWG_016

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_016 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2364

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7NWG|1|51|G|1178
7NWG|1|51|U|1179
7NWG|1|51|C|1180
7NWG|1|51|C|1181
7NWG|1|51|C|1182
7NWG|1|51|C|1183

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10