HL_7NWG_023

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGCCAGAGGAAACUCUGGUGGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|1551
7NWG|1|51|G|1552
7NWG|1|51|A|1553
7NWG|1|51|A|1554
7NWG|1|51|G|1555
7NWG|1|51|C|1556
7NWG|1|51|C|1557
7NWG|1|51|A|1558
7NWG|1|51|G|1559
7NWG|1|51|A|1560
7NWG|1|51|G|1561
7NWG|1|51|G|1562
7NWG|1|51|A|1563
7NWG|1|51|A|1564
7NWG|1|51|A|1565
7NWG|1|51|C|1566
7NWG|1|51|U|1567
7NWG|1|51|C|1568
7NWG|1|51|U|1569
7NWG|1|51|G|1570
7NWG|1|51|G|1571
7NWG|1|51|U|1572
7NWG|1|51|G|1573
7NWG|1|51|G|1574
7NWG|1|51|A|1575
7NWG|1|51|G|1576

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

L8

Chain O2

ribosomal protein uS15

Chain R3

60S ribosomal protein L19

Chain p3

ribosomal protein eL43