HL_7NWG_027

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

7NWG|1|51|A|1765, 7NWG|1|51|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_027 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5713

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWG|1|51|C|1763
7NWG|1|51|G|1764
7NWG|1|51|A|1765
7NWG|1|51|A|1766
7NWG|1|51|A|1767
7NWG|1|51|C|1768
7NWG|1|51|G|1769

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain Q2

40S ribosomal protein uS19