3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
Length
40 nucleotides
Bulged bases
7NWG|1|51|C|2094, 7NWG|1|51|G|2112, 7NWG|1|51|G|2113, 7NWG|1|51|U|2267, 7NWG|1|51|C|2269
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWG|1|51|C|2087
7NWG|1|51|A|2088
7NWG|1|51|G|2089
7NWG|1|51|U|2090
7NWG|1|51|C|2091
7NWG|1|51|G|2092
7NWG|1|51|G|2093
7NWG|1|51|C|2094
7NWG|1|51|A|2095
7NWG|1|51|G|2096
7NWG|1|51|A|2097
7NWG|1|51|G|2098
7NWG|1|51|C|2099
7NWG|1|51|G|2100
7NWG|1|51|A|2101
7NWG|1|51|G|2102
7NWG|1|51|A|2103
7NWG|1|51|A|2104
7NWG|1|51|A|2105
7NWG|1|51|G|2106
7NWG|1|51|A|2107
7NWG|1|51|G|2108
7NWG|1|51|A|2109
7NWG|1|51|G|2110
7NWG|1|51|U|2111
7NWG|1|51|G|2112
7NWG|1|51|G|2113
7NWG|1|51|C|2258
7NWG|1|51|G|2259
7NWG|1|51|C|2260
7NWG|1|51|G|2261
7NWG|1|51|G|2262
7NWG|1|51|A|2263
7NWG|1|51|C|2264
7NWG|1|51|G|2265
7NWG|1|51|C|2266
7NWG|1|51|U|2267
7NWG|1|51|A|2268
7NWG|1|51|C|2269
7NWG|1|51|G|2270

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain C3
uL4
Chain E3
60S ribosomal protein L6
Chain F3
uL30
Chain Q3
L18
Chain b3
eL29
Chain e3
eL32
Chain r3
eL28

Coloring options:

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