HL_7NWG_036

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAACAGCAGUUGAAC

Length

17 nucleotides

Bulged bases

7NWG|1|51|A|2417, 7NWG|1|51|G|2421, 7NWG|1|51|C|2422, 7NWG|1|51|U|2425, 7NWG|1|51|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|2414
7NWG|1|51|U|2415
7NWG|1|51|G|2416
7NWG|1|51|A|2417
7NWG|1|51|A|2418
7NWG|1|51|C|2419
7NWG|1|51|A|2420
7NWG|1|51|G|2421
7NWG|1|51|C|2422
7NWG|1|51|A|2423
7NWG|1|51|G|2424
7NWG|1|51|U|2425
7NWG|1|51|U|2426
7NWG|1|51|G|2427
7NWG|1|51|A|2428
7NWG|1|51|A|2429
7NWG|1|51|C|2430

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

60S ribosomal protein L19

Chain l3

eL39