HL_7NWG_051

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCGCGGCGGGU

Length

13 nucleotides

Bulged bases

7NWG|1|51|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_051 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.355

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7NWG|1|51|G|3665
7NWG|1|51|C|3666
7NWG|1|51|C|3667
7NWG|1|51|C|3668
7NWG|1|51|G|3669
7NWG|1|51|C|3670
7NWG|1|51|G|3671
7NWG|1|51|G|3672
7NWG|1|51|C|3673
7NWG|1|51|G|3674
7NWG|1|51|G|3675
7NWG|1|51|G|3676
7NWG|1|51|U|3677

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A3

L8

Chain G3

L7a

Chain N3

Ribosomal protein L15