3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWG_052 not in the Motif Atlas
Homologous match to HL_5TBW_048
Geometric discrepancy: 0.1498
The information below is about HL_5TBW_048
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7NWG|1|51|A|3724
7NWG|1|51|G|3725
7NWG|1|51|A|3726
7NWG|1|51|A|3727
7NWG|1|51|A|3728
7NWG|1|51|U|3729

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain i3
60S ribosomal protein L36
Chain o3
eL42
Chain w3
Ribosomal protein

Coloring options:


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