HL_7NWG_054

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUCUAAUUAGUG

Length

13 nucleotides

Bulged bases

7NWG|1|51|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_054 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.136

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7NWG|1|51|C|3794
7NWG|1|51|A|3795
7NWG|1|51|U|3796
7NWG|1|51|C|3797
7NWG|1|51|U|3798
7NWG|1|51|A|3799
7NWG|1|51|A|3800
7NWG|1|51|U|3801
7NWG|1|51|U|3802
7NWG|1|51|A|3803
7NWG|1|51|G|3804
7NWG|1|51|U|3805
7NWG|1|51|G|3806

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain V3

eL14

Chain n3

60s ribosomal protein l41