HL_7NWG_055

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7NWG|1|51|A|3876, 7NWG|1|51|A|3877, 7NWG|1|51|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2481

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWG|1|51|G|3873
7NWG|1|51|G|3874
7NWG|1|51|G|3875
7NWG|1|51|A|3876
7NWG|1|51|A|3877
7NWG|1|51|C|3878
7NWG|1|51|G|3879
7NWG|1|51|G|3880
7NWG|1|51|G|3881
7NWG|1|51|C|3882

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

60S RIBOSOMAL PROTEIN UL13

Chain e3

eL32