HL_7NWG_058

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7NWG|1|51|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_058 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1869

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7NWG|1|51|C|4193
7NWG|1|51|U|4194
7NWG|1|51|G|4195
7NWG|1|51|G|4196
7NWG|1|51|G|4197
7NWG|1|51|G|4198
7NWG|1|51|C|4199
7NWG|1|51|G|4200
7NWG|1|51|G|4201

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain b3

eL29

Chain q3

Transfer RNA; tRNA