HL_7NWG_060

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_060 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.194

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NWG|1|51|G|4250
7NWG|1|51|A|4251
7NWG|1|51|C|4252
7NWG|1|51|A|4253
7NWG|1|51|G|4254
7NWG|1|51|A|4255
7NWG|1|51|A|4256
7NWG|1|51|A|4257
7NWG|1|51|C|4258

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain J3

60S ribosomal protein L11

Chain q3

Transfer RNA; tRNA