3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAGAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWG_061 not in the Motif Atlas
Homologous match to HL_5TBW_057
Geometric discrepancy: 0.1761
The information below is about HL_5TBW_057
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

7NWG|1|51|C|4270
7NWG|1|51|A|4271
7NWG|1|51|G|4272
7NWG|1|51|A|4273
7NWG|1|51|A|4274
7NWG|1|51|G|4275
7NWG|1|51|G|4276
7NWG|1|51|G|4277

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain I3
60S ribosomal protein L10
Chain T3
eL21
Chain o3
eL42

Coloring options:


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