3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWG_069 not in the Motif Atlas
Homologous match to HL_5TBW_065
Geometric discrepancy: 0.1947
The information below is about HL_5TBW_065
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7NWG|1|51|C|4603
7NWG|1|51|G|4604
7NWG|1|51|A|4605
7NWG|1|51|G|4606
7NWG|1|51|A|4607
7NWG|1|51|G|4608

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain H3
L9
Chain m3
60S RIBOSOMAL PROTEIN EL40

Coloring options:


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