HL_7NWG_074

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7NWG|1|51|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_074 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.2158

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7NWG|1|51|G|4975
7NWG|1|51|U|4976
7NWG|1|51|A|4977
7NWG|1|51|G|4978
7NWG|1|51|A|4979
7NWG|1|51|C|4980
7NWG|1|51|G|4981
7NWG|1|51|A|4982
7NWG|1|51|C|4983

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22