HL_7NWG_081

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

7NWG|1|81|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_081 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3296

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7NWG|1|81|G|121
7NWG|1|81|G|122
7NWG|1|81|U|123
7NWG|1|81|U|124
7NWG|1|81|C|125
7NWG|1|81|C|126
7NWG|1|81|U|127
7NWG|1|81|C|128
7NWG|1|81|C|129

Current chains

Chain 81

5.8S Ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain X3

uL23