HL_7NWG_085

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_085 not in the Motif Atlas

Geometric match to HL_4FRG_001

Geometric discrepancy: 0.3526

The information below is about HL_4FRG_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

7NWG|1|A2|C|196
7NWG|1|A2|U|197
7NWG|1|A2|U|198
7NWG|1|A2|C|199
7NWG|1|A2|G|200
7NWG|1|A2|C|201
7NWG|1|A2|G|202
7NWG|1|A2|G|203

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8