HL_7NWG_086

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGAUCAAAACCAACCCGGUCAGGCGGCUUUGGUGACUCUAG

Length

42 nucleotides

Bulged bases

7NWG|1|A2|C|233, 7NWG|1|A2|C|234, 7NWG|1|A2|U|294

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|C|223
7NWG|1|A2|A|224
7NWG|1|A2|G|225
7NWG|1|A2|A|226
7NWG|1|A2|U|227
7NWG|1|A2|C|228
7NWG|1|A2|A|229
7NWG|1|A2|A|230
7NWG|1|A2|A|231
7NWG|1|A2|A|232
7NWG|1|A2|C|233
7NWG|1|A2|C|234
7NWG|1|A2|A|235
7NWG|1|A2|A|236
7NWG|1|A2|C|237
7NWG|1|A2|C|238
7NWG|1|A2|C|239
7NWG|1|A2|G|240
7NWG|1|A2|G|241
7NWG|1|A2|U|242
7NWG|1|A2|C|243
7NWG|1|A2|A|244
7NWG|1|A2|G|279
7NWG|1|A2|G|280
7NWG|1|A2|C|281
7NWG|1|A2|G|282
7NWG|1|A2|G|283
7NWG|1|A2|C|284
7NWG|1|A2|U|285
7NWG|1|A2|U|286
7NWG|1|A2|U|287
7NWG|1|A2|G|288
7NWG|1|A2|G|289
7NWG|1|A2|U|290
7NWG|1|A2|G|291
7NWG|1|A2|A|292
7NWG|1|A2|C|293
7NWG|1|A2|U|294
7NWG|1|A2|C|295
7NWG|1|A2|U|296
7NWG|1|A2|A|297
7NWG|1|A2|G|298

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain H2

40S ribosomal protein S6

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11