HL_7NWG_091

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7NWG|1|A2|A|464, 7NWG|1|A2|A|465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_091 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2177

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7NWG|1|A2|C|462
7NWG|1|A2|C|463
7NWG|1|A2|A|464
7NWG|1|A2|A|465
7NWG|1|A2|G|466
7NWG|1|A2|G|467

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain V3

eL14