HL_7NWG_092

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGACCCGG

Length

9 nucleotides

Bulged bases

7NWG|1|A2|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_092 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3926

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7NWG|1|A2|C|497
7NWG|1|A2|C|498
7NWG|1|A2|G|499
7NWG|1|A2|A|500
7NWG|1|A2|C|501
7NWG|1|A2|C|502
7NWG|1|A2|C|503
7NWG|1|A2|G|504
7NWG|1|A2|G|505

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain Z2

40S ribosomal protein S24