HL_7NWG_106

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACAGAUUGAUAGCUCUUUC

Length

20 nucleotides

Bulged bases

7NWG|1|A2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|1290
7NWG|1|A2|A|1291
7NWG|1|A2|C|1292
7NWG|1|A2|A|1293
7NWG|1|A2|G|1294
7NWG|1|A2|A|1295
7NWG|1|A2|U|1296
7NWG|1|A2|U|1297
7NWG|1|A2|G|1298
7NWG|1|A2|A|1299
7NWG|1|A2|U|1300
7NWG|1|A2|A|1301
7NWG|1|A2|G|1302
7NWG|1|A2|C|1303
7NWG|1|A2|U|1304
7NWG|1|A2|C|1305
7NWG|1|A2|U|1306
7NWG|1|A2|U|1307
7NWG|1|A2|U|1308
7NWG|1|A2|C|1309

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain L2

40S ribosomal protein S10

Chain N2

40S ribosomal protein S12

Chain Q2

40S ribosomal protein uS19

Chain e2

uS14

Chain g2

eS31