HL_7NWG_110

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

7NWG|1|A2|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_110 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5379

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7NWG|1|A2|C|1460
7NWG|1|A2|G|1461
7NWG|1|A2|U|1462
7NWG|1|A2|U|1463
7NWG|1|A2|C|1464
7NWG|1|A2|A|1465
7NWG|1|A2|G|1466

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain S2

40S ribosomal protein S17

Chain h2

ribosomal protein RACK1