HL_7NWG_113

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUCAUAAGCUU

Length

13 nucleotides

Bulged bases

7NWG|1|A2|A|1663, 7NWG|1|A2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|1656
7NWG|1|A2|G|1657
7NWG|1|A2|G|1658
7NWG|1|A2|U|1659
7NWG|1|A2|C|1660
7NWG|1|A2|A|1661
7NWG|1|A2|U|1662
7NWG|1|A2|A|1663
7NWG|1|A2|A|1664
7NWG|1|A2|G|1665
7NWG|1|A2|C|1666
7NWG|1|A2|U|1667
7NWG|1|A2|U|1668

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain R2

Ribosomal protein S16

Chain U2

S19

Chain V2

40S ribosomal protein S20

Chain e2

uS14