3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAGGUGAAAUUC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWG_145 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.285
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27483.1
Basepair signature
cWW-F
Number of instances in this motif group
2

Unit IDs

7NWG|1|A2|G|956
7NWG|1|A2|A|957
7NWG|1|A2|G|958
7NWG|1|A2|G|959
7NWG|1|A2|U|960
7NWG|1|A2|G|961
7NWG|1|A2|A|962
7NWG|1|A2|A|963
7NWG|1|A2|A|964
7NWG|1|A2|U|965
7NWG|1|A2|U|966
7NWG|1|A2|C|967

Current chains

Chain A2
18S Ribosomal RNA

Nearby chains

Chain 51
Large subunit ribosomal RNA; LSU rRNA
Chain P2
uS11
Chain b2
40S ribosomal protein S26
Chain v3
mRNA

Coloring options:


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