HL_7NWG_149

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7NWG|1|51|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_149 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.21

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NWG|1|51|U|1317
7NWG|1|51|C|1318
7NWG|1|51|U|1319
7NWG|1|51|U|1320
7NWG|1|51|G|1321
7NWG|1|51|A|1322
7NWG|1|51|A|1323
7NWG|1|51|A|1324
7NWG|1|51|C|1325
7NWG|1|51|A|1326

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32