HL_7NWG_157

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7NWG|1|A2|A|500, 7NWG|1|A2|C|502, 7NWG|1|A2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_157 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.3162

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7NWG|1|A2|C|498
7NWG|1|A2|G|499
7NWG|1|A2|A|500
7NWG|1|A2|C|501
7NWG|1|A2|C|502
7NWG|1|A2|C|503
7NWG|1|A2|G|504

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain Z2

40S ribosomal protein S24