HL_7NWH_027

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7NWH|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_027 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.2206

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7NWH|1|5|C|1816
7NWH|1|5|U|1817
7NWH|1|5|G|1818
7NWH|1|5|G|1819
7NWH|1|5|U|1820
7NWH|1|5|G|1821
7NWH|1|5|U|1822
7NWH|1|5|G|1823

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain b

eL29