HL_7NWH_054
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AUCUAAUUAGU
- Length
- 11 nucleotides
- Bulged bases
- 7NWH|1|5|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWH_054 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3948
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7NWH|1|5|A|3795
7NWH|1|5|U|3796
7NWH|1|5|C|3797
7NWH|1|5|U|3798
7NWH|1|5|A|3799
7NWH|1|5|A|3800
7NWH|1|5|U|3801
7NWH|1|5|U|3802
7NWH|1|5|A|3803
7NWH|1|5|G|3804
7NWH|1|5|U|3805
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- eL14
Coloring options: