HL_7NWH_088

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7NWH|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_088 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2452

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7NWH|1|9|G|377
7NWH|1|9|U|378
7NWH|1|9|C|379
7NWH|1|9|G|380
7NWH|1|9|C|381
7NWH|1|9|C|382
7NWH|1|9|G|383
7NWH|1|9|U|384
7NWH|1|9|G|385
7NWH|1|9|C|386
7NWH|1|9|C|387

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

40S ribosomal protein S11