HL_7NWH_090

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7NWH|1|9|A|448, 7NWH|1|9|C|450, 7NWH|1|9|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_090 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1847

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|C|441
7NWH|1|9|C|442
7NWH|1|9|U|443
7NWH|1|9|G|444
7NWH|1|9|A|445
7NWH|1|9|G|446
7NWH|1|9|A|447
7NWH|1|9|A|448
7NWH|1|9|A|449
7NWH|1|9|C|450
7NWH|1|9|G|451
7NWH|1|9|G|452

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8